Gene Synpcc7942_1358 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSynpcc7942_1358 
Symbol 
ID3775551 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSynechococcus elongatus PCC 7942 
KingdomBacteria 
Replicon accessionNC_007604 
Strand
Start bp1397087 
End bp1397878 
Gene Length792 bp 
Protein Length263 aa 
Translation table11 
GC content54% 
IMG OID637799789 
Producthypothetical protein 
Protein accessionYP_400375 
Protein GI81300167 
COG category[S] Function unknown 
COG ID[COG4279] Uncharacterized conserved protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones26 
Plasmid unclonability p-value0.370884 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones47 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAATACAG CCTCTGATCC CTGGTGGGTT CAACAGTGGC TGGATTTGAT CAATGCCTAT 
CGCTTCAAGA AACGCTTGGA GCGAGGTTGG CGCTATGCCC GCGAAGGTCA TGTCCTCAGC
ATTTGCTTCC AAGGGCAAAA AGTGGAGGCG AAGGTTCAAG GGACTGAAGC GAAGCCCTAT
CGAGTCTCGC TTTGGCTGGA TCCAATCAGT GAGGAGGACT GGGGCTACGT CATTTCAGCC
TTGGCGACTG AGGCCCGTTG GTCAGCACTG TTGTTAGCAG GCGAAATGCC CGCCGACATC
GAGACGGTGT TCGCCCGTAA TGGTTTGCGC CTTTTCCCGT TTAGCCTCAG TGATGTCCAC
TCGCGCTGTA GCTGTCCAGA TAAAGCCAAC CCTTGCAAGC ATGTCAGCGC TATCTACTAC
CTGCTTGGCG ATCGCTTTAG TGAAGATCCC TTCGTGCTTT TTCAGCTCCG GGGACGGCAA
CGACAGCAGC TACTAGAGGA ATTGCGATCG CGTCGCCAAG CTAGCCTTCA ACCAACGCCA
GAAGTCTCTG CTGCACCAGT TCCTCAGCTG CAGCAATTTT GGGATTACGC CGATCCCCTT
GACCCAGAGC TGGTGATTAT CACGCCCAGT CTCGGCGACA CAGTGCTTGG ACAATTGGGT
TCTTTGCCCC TTGCGAGCGA TCCTCGTTTA GAGACCAGCG CTGCGCAGCT ACTAGTGCAA
TTGCGGCAGC TCTATGAGGA TGTTGCTCAG TCAGTTTTCT TGGAATCTAT GGCATCAGCA
GGCGATCGCT GA
 
Protein sequence
MNTASDPWWV QQWLDLINAY RFKKRLERGW RYAREGHVLS ICFQGQKVEA KVQGTEAKPY 
RVSLWLDPIS EEDWGYVISA LATEARWSAL LLAGEMPADI ETVFARNGLR LFPFSLSDVH
SRCSCPDKAN PCKHVSAIYY LLGDRFSEDP FVLFQLRGRQ RQQLLEELRS RRQASLQPTP
EVSAAPVPQL QQFWDYADPL DPELVIITPS LGDTVLGQLG SLPLASDPRL ETSAAQLLVQ
LRQLYEDVAQ SVFLESMASA GDR