Gene Synpcc7942_1271 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSynpcc7942_1271 
Symbol 
ID3773560 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSynechococcus elongatus PCC 7942 
KingdomBacteria 
Replicon accessionNC_007604 
Strand
Start bp1295438 
End bp1296175 
Gene Length738 bp 
Protein Length245 aa 
Translation table11 
GC content54% 
IMG OID637799701 
Producthypothetical protein 
Protein accessionYP_400288 
Protein GI81300080 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones30 
Plasmid unclonability p-value0.926997 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones28 
Fosmid unclonability p-value0.593282 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGGCAGCG CTTCTTCTTG CCGCCGCATC TACATTGGCA CTGAAGCCAA CCAATACTTA 
GCGGAGCAGA CGTTGATCTA TTCGATCCGC AAGCACCTTT CGGATCCCAG CATTGAGATC
ATTCCGCTGA CCCAAACTCA GCAGCGCGTT GGTGGCACCC GTTTTGGCTT TGTGCGTTTC
ACGCTACCGC AAGCAATGGG CTATCAGGGC AAAGCCCTTT ACCTCGATGC CGACCAGCTA
GCCCTCACTG ATTTAGCGCC AATCTTTGAC CTTTTGCCAG ACGACAAGGC GATCGCCTGC
GTCTACGAAG CAGAAGGGCT TTACAACGGC AAACCCCATG TCCAGACCTG GCATACCAGC
GTCATGCTGC TGGACTGTGA GCAACTAGCC TGGCAACCAG ATGAGCTGTT TGCCACAGTG
GTGCCGAACA AGCAAGAACC TAAGCCTGGT CAGATTCGCT ATCGCAACTT CATGGAGCTG
CAATGGTTCG AGCAGGAGCG CATTGCCAAG CTGCCGCCTT CTTGGAATCA CTTCAACATC
GTGACGCCCG AGACGAACAT TGTGCACTTT TCCCATGTCC GTAGTCAGCC TTGGAAAAAT
CCTCGCCATG AGTTGACGGA TTTTTGGCTG GGTTATCTCA AGGAAGCGAT CGCAGCAGGT
TATTTACGGC GACGGGATGT AGTCGCAGCA GTTGCACGGG GACATGTTCA CCCTTGGACG
CTCAAAGCGA TCGCCTAG
 
Protein sequence
MGSASSCRRI YIGTEANQYL AEQTLIYSIR KHLSDPSIEI IPLTQTQQRV GGTRFGFVRF 
TLPQAMGYQG KALYLDADQL ALTDLAPIFD LLPDDKAIAC VYEAEGLYNG KPHVQTWHTS
VMLLDCEQLA WQPDELFATV VPNKQEPKPG QIRYRNFMEL QWFEQERIAK LPPSWNHFNI
VTPETNIVHF SHVRSQPWKN PRHELTDFWL GYLKEAIAAG YLRRRDVVAA VARGHVHPWT
LKAIA