| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Synpcc7942_1124 |
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| Symbol | |
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| ID | 3775074 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Synechococcus elongatus PCC 7942 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007604 |
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| Strand | + |
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| Start bp | 1141288 |
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| End bp | 1143300 |
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| Gene Length | 2013 bp |
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| Protein Length | 670 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 637799550 |
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| Product | exoribonuclease II |
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| Protein accession | YP_400141 |
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| Protein GI | 81299933 |
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| COG category | [K] Transcription |
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| COG ID | [COG0557] Exoribonuclease R |
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| TIGRFAM ID | [TIGR00358] VacB and RNase II family 3'-5' exoribonucleases |
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Plasmid Coverage information |
| Num covering plasmid clones | 27 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 36 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGGAAGCAG GAACGCTGAT TGAGTTTCGC CTAGGTGGTC AACGCCACTT AGGCGTTTTG
GATCGTCCAG ACGGCAAAAA AAATTGGATT GTCGTCGATG AACGCGGGGC AAACCGCTCG
CTCCACCCCC GCGATTTCAC CTATGTGGTG GCGGGACAAA TCTATAAACC CCAAGAGCTT
GCTGCTTTTC GCAGGGAAGT GGAGGCCCTA CTCGACCCCG ATGCGTTAGC GATCGCTTGG
GAAATGTTGG TTGATGAAGG GGAAGAGGCA GAACTCGCAA TCCTCAGTGA TCTGCTGTTC
TCACAAGCGG ATCCAGCCGC CCTCTACGCG ACCTTTCGTC TCTTGGATGA CGATCGCACC
TACTTCCGGC AGCGCCGCGA TCGCTACGAA GCGCGCAGCC GTGAGCAAGT CGCTGAGCAG
CAACGACAGC TGGCGATCGC TGCTGAAAAA GCCCGACTCT GGCAAAACTT TCTCGATCGC
TGTCAGCAGG CACAAGGTGG TGAGACTGTC ACTTGGATCG ATAGCGATCG CCCTTGGTTG
AAGGCCCTCG AACAATGGGC ACTCTTTAGC GAAGACGGCA ACAACACTCG AGCTGCGACC
GAAGTTCTGA CAGCTTTAGG TCGCCAAGCC TCGGCTCAGG CTGCCCATGA CCTGTTGGTC
GCCTTGGGTT ACTGGCAACC GCACGAAAAT CTCTTTTTGC GCCGCAGCCA AGTCCCGACA
ACATTCCCTG TCGCGGTGAT GGATGTGGTT CAAACTTGCT TAGATGCTCC TCCCGTTGAC
CGCGATCGCC GTCAGGATCT CAGCCATCTC AAGGTCTACA CGATCGATGA TGAGAGTACA
CGGGAGATTG ACGATGGTTT GAGCTGTCAG CGGCTCAGCG ACGGTCGCCT CCAACTCTGG
GTGCATGTTG CTGACCCAAC CCGCTTGATT GAACCGGGCG ATGCCCTAGA TCTGGAAGCC
CGTCGCCGCA GCACCACCAT CTATTTACCC ACCGGCATGG TACCGATGTT CCCCTTGGAA
CTGGCGGCCG GTCCGATGAG TTTGGTGCAA GGGCAAGCCT GCTGTGCCCT CAGCTTTGGT
ATCTGTCTGG ATGAGCAAGG GGCGATCGCC AGCTACGAGA TTGTGCCCAG CCAAATTCGA
CCGACCTATC GCCTCACCTA CGAAGATGTC GACGAAATGC TCGACCTCGG CGTGACAGCA
GAGCAAGAAT TACTCGACCT CTGGGAGATG GCCCAACGGC GACGCCGGTG GCGGCACCAG
CAAGGGGCGA TCGCCATCAA CATGCCTGAG GCGGTGATCA AGGTCTCTGA AGCCGACGAT
CAAATCTCGA TTTCCGTGCT AGAAGAATCG GCTGCGCGTG CCCTCGTCGC CGAAATGATG
ATTCTGGCAG GTGAAGTCGC GGGCCACTAC GGCGCAACAA ACGGCTTACC GCTACCGTTC
CGGGGACAGC CCCAACCGGA ATTACCGAGC GAAGAAGAAT TGCTGGCGCT GCCTGCCGGT
CCTGTCCGAT CCTGTGCAAT CCGGCGCTGT ATGCCTCGCA GCGAAACGAG TCTCAACCCC
CAGCGCCATG CCAGCTTGGG CCTCGACCGC TACTCGCAGG TCACCTCCCC GATTCGGCGC
TACACCGACC TCGTTACCCA CTTCCAAATC AAGGCGCATC TGCGGGGCGA CCAACTCCCC
TTCAGTGCAG AAGAACTGGA AACACTGCTG CAGAGTACCC TCAGCCTCAG CTATGAAGCC
GTGCTGGTGG AGCGGCAGAC CAATCGCTAC TGGGGTCTGG AGTACCTGCG TCGTCAGGGC
GATCGCATCT GGTCGTCCCT GATTCTGCGC TGGCTGCGAG AGCACGAGCA ACTTGCGTTG
ATTCTGATTG AAGACCTTGG CTTAGAGCTG CCAATTCGCC TCAGTCAGCC CGTGGAACTG
GGCGATCGCT TGGCTCTACG CGTCACCCAC GCCGACCCGC GCCAAGATCG CATCCAATTT
GAGGTGGTCG AAAGCCTAGA GTCTGTGGAC TAG
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| Protein sequence | MEAGTLIEFR LGGQRHLGVL DRPDGKKNWI VVDERGANRS LHPRDFTYVV AGQIYKPQEL
AAFRREVEAL LDPDALAIAW EMLVDEGEEA ELAILSDLLF SQADPAALYA TFRLLDDDRT
YFRQRRDRYE ARSREQVAEQ QRQLAIAAEK ARLWQNFLDR CQQAQGGETV TWIDSDRPWL
KALEQWALFS EDGNNTRAAT EVLTALGRQA SAQAAHDLLV ALGYWQPHEN LFLRRSQVPT
TFPVAVMDVV QTCLDAPPVD RDRRQDLSHL KVYTIDDEST REIDDGLSCQ RLSDGRLQLW
VHVADPTRLI EPGDALDLEA RRRSTTIYLP TGMVPMFPLE LAAGPMSLVQ GQACCALSFG
ICLDEQGAIA SYEIVPSQIR PTYRLTYEDV DEMLDLGVTA EQELLDLWEM AQRRRRWRHQ
QGAIAINMPE AVIKVSEADD QISISVLEES AARALVAEMM ILAGEVAGHY GATNGLPLPF
RGQPQPELPS EEELLALPAG PVRSCAIRRC MPRSETSLNP QRHASLGLDR YSQVTSPIRR
YTDLVTHFQI KAHLRGDQLP FSAEELETLL QSTLSLSYEA VLVERQTNRY WGLEYLRRQG
DRIWSSLILR WLREHEQLAL ILIEDLGLEL PIRLSQPVEL GDRLALRVTH ADPRQDRIQF
EVVESLESVD
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