Gene Synpcc7942_0950 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSynpcc7942_0950 
Symbol 
ID3775338 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSynechococcus elongatus PCC 7942 
KingdomBacteria 
Replicon accessionNC_007604 
Strand
Start bp958421 
End bp959737 
Gene Length1317 bp 
Protein Length438 aa 
Translation table11 
GC content58% 
IMG OID637799369 
Productputative multiple sugar transport system substrate-binding protein 
Protein accessionYP_399967 
Protein GI81299759 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG1653] ABC-type sugar transport system, periplasmic component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones28 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones40 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCCGTTCT TGCGTTGTGG GTTGACTCGC TGGCGATCGC TGCGGCTATT GCCCCTGCTA 
CTCACCCTAT TCATCGTCCT TGCGCTCGGC GGGCTCGGAA CAGGAACCCA GCGATCAGCC
GCTGCGGATT CGACCGTTGT GCTGCGAGCG CTGCTACCCG CACCGTTTCG AGAGGCGATG
CAACCGGCGA TCGCTCGTTT TACGGCTGAA CATCCTGAAA TTCAGCTGGA ATTGGTGGCG
GGGCCAAATG ACACCAGCCT GGTGTCCGAC CTCTACACCA CCGCTTTTTT GCTGGGGAAT
GCACCCTACG ATTTGGTCTT TCTGGATGTG ACTTGGCTGC CAAAATTTGT TGCCGCCGGT
TGGTTGCTGG ATCTGAGCGA TCGCGTTTTG CCTGAAATCC AAGCCGAATT TTTGCCCGCA
GCTCTGAATG GCAGTTTTTA TCGCGATCGC CTCTATCGCC TGCCTTTGAA TGCGGCGGTT
GGGCTGCTTT ACTACCGGCA GGACTTGATG CCCGAGCCGC CCCAAACTTT CACGGAGCTG
GTGCAGCGAT CGCAACAACT GCAAGCGCAG GGAGTCGTGC CTTGGGGCTA CGTTTGGCAG
GGCAAACAGT ACGAGGGCTT AGTCTGCAAC TTTCTAGAAG TGCTGGCGGG CTTTGGCGGC
TACTGGATTG ATCCACAAAC CGGCGAGGTT GGATTGGATC ATCCCGAAGC GATCGCGGCG
GCGGATTGGC TGCACAGCAC GATCACCGAC CAGATTTCGC CCGCGGGGGT CAGCACCTTT
CAGGAGAATG AAGCACTCAA GCTGTTTGAA ACCGGTCAGA GTGCCTTTAT GCGCAACTGG
CCCTATGCGG AAATGCTGCT GGAGCGACCG GAATCGGCAG TGCGGGGCAA GGTCGGGATT
GCGCCGATGG TCCATGCGCC CGGCCAAACC AGTGCTGCCA CCCAAGGAAC TTGGGGTGTG
GGCATTGCCC AGCAAACGGA GCATCCTGAA GCGGCGTTAA CCGCATTGTT AGCACTGACC
GATGCTGAGT CACAACGCTT GATCAGCCTT GGTTCTAACT ACATTCCAAC GCGATCGGCG
CTCTATCAAG ATCCCGAATT GCTGGCGCGC TATCCCTTCT ATGCGACACT GCCGCCCATT
TTGGAATCAA CGGTGCTGCG ATCGCCGCTA CCCGCCTACG ATGCTCTGTC GGATATTCTG
CAGCGTCACC TGAGTGCAGC CATCAGCGGC CAAACGCCCG TTGCGATCGC CCTGCAACAG
GCTGCGCGGG AGTCTCGTCA GTTGCTCACC AGTCAGCAAG GAGCAACAGC CTCATGA
 
Protein sequence
MPFLRCGLTR WRSLRLLPLL LTLFIVLALG GLGTGTQRSA AADSTVVLRA LLPAPFREAM 
QPAIARFTAE HPEIQLELVA GPNDTSLVSD LYTTAFLLGN APYDLVFLDV TWLPKFVAAG
WLLDLSDRVL PEIQAEFLPA ALNGSFYRDR LYRLPLNAAV GLLYYRQDLM PEPPQTFTEL
VQRSQQLQAQ GVVPWGYVWQ GKQYEGLVCN FLEVLAGFGG YWIDPQTGEV GLDHPEAIAA
ADWLHSTITD QISPAGVSTF QENEALKLFE TGQSAFMRNW PYAEMLLERP ESAVRGKVGI
APMVHAPGQT SAATQGTWGV GIAQQTEHPE AALTALLALT DAESQRLISL GSNYIPTRSA
LYQDPELLAR YPFYATLPPI LESTVLRSPL PAYDALSDIL QRHLSAAISG QTPVAIALQQ
AARESRQLLT SQQGATAS