| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PMT9312_1420 |
|---|
| Symbol | |
|---|
| ID | 3766235 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Prochlorococcus marinus str. MIT 9312 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007577 |
|---|
| Strand | + |
|---|
| Start bp | 1332760 |
|---|
| End bp | 1334793 |
|---|
| Gene Length | 2034 bp |
|---|
| Protein Length | 677 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 31% |
|---|
| IMG OID | 637797955 |
|---|
| Product | alpha amylase domain-containing protein |
|---|
| Protein accession | YP_397916 |
|---|
| Protein GI | 78779804 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1523] Type II secretory pathway, pullulanase PulA and related glycosidases |
|---|
| TIGRFAM ID | [TIGR02100] glycogen debranching enzyme GlgX |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGACTCATA TCAATAAAGG TAACCCATTT CCTCTAGGAA GTTCTCTAAC TGCAAAAGGA
GTTAATTTTT CCCTAATAGC CACAAATGCA GCATTTGTAG AAATCTTGTT GTTTGAGAAA
GAAGACTCTA TTTCCCCAAA AAACATATTT AAACTAGATC ATAATCATAA CACTGGTCCC
TACTGGCATG CTGAAATAGA AAATCTTAAT GAAGGTTGTA TTTATGCTTT TAGAATAAAT
CAAAAAAATA ATGGGATTAA CAATAATTAC GAAAAAAAGG TTTTACTTGA TCCATGTTCA
AGGGGTATTA CTGGATGGGG AATTTATAAA AGAGAAAATG CATTAAATAC GAATGACAAT
ACTAATTCTT GTCTTAAAAG CGTAGTTTGC GACAGAAAAT TATTTAATTT TGAAGATTAT
CCAAGACCAA AACATTCTTG GGAAGAAACA ATTATTTATG AACTCCATAT AAGAGCCTTT
ACTGAGTCAA CGGATAAAGA TAAAAGTTGT TTTAAAAAAT TTTTGAAAAA AATTCCGTAT
CTCAAGGAAC TTGGTATTAC AACAATTGAA TTGCTTCCAG TTTTTTGTTT TGATCCAACT
GATGCACCAA ATGGTTTAGA AAATTTTTGG GGTTATAGTC CAATCAATTG GTTTACACCG
CATTTTGAAT ATCTTTCGAA TGAGTCTGCA GAAAAGAATA GAGAGGAATT TAGAAGATTA
GTAGAGGAAT GTCATAAAGC AGACATTGAA GTAATCTTAG ATGTTGTATA CAATCACACC
TCTGAGGGAG ATTCCCAAGG ACCTGTAATA TCTTGGAAAG GTATAGATGA AAATCTTTAT
TACTTTATTG GAAAAGATAA AAATTATCAG GACGTCTCTG GGTGCGGTAA TACTATTGCA
GCAAACAGAG GATTAGTTAG AAAACTAATA ATTGAATCAT TAAAATGTTG GGCGAGTGAA
TTAGGAGTTG ATGGTTTTAG ATTTGATTTA GGAATTGCCC TATCAAGAGG AGAAAATCTT
TCGCCACTAG ATAATCCTCC AATTTTTGAA GATATAGAAT GTGAACCAGA ACTTATTGAT
ATCAAATTCA TAAGTGAACC ATGGGATTGT GGTGGTTTAT ATAAATTAGG TGATTTCCCA
TCTAAGACTA CTTTTACTTG GAATGGCCAT TTTAGAGATG ATTTGCGAAG ATTTTGGAAG
GGAGATAAAG ATACAGCTTG GAATATGAGC GATAAAATAA AAGGTACTCC ATCTATGTAT
AAAGAAGATA ATATTTTCCC AAAATCAATA AATTTTATTA CTTCACATGA TGGATTCACT
CTAAAAGATT TAGTAACATT CAATAGAAAA CATAATTTTG CTAATAGAGA ACAAAATAGA
GATGGAGATA ACCATAACAA TTCTTGGAAT CATGGTACGG AGGGACCAAC TAAAAACTTA
TTAATCAATG ATTTAAGAAA AAGACAACAA AGAAATCTTA TTCTTAGTTT ACTTATCTCT
AAAGGTGTTC CAATGATTCT AATGGGTGAT GAAATAGGAA GGTCCCAAGG AGGCAACAAT
AATTCTTGGT GCCAAAATAA TTTATTGGGT TGGATGAATT GGGATCATGA TCAACAAGAT
TTGGAATTAT TAGAATATTC TAAATACGTT ATAAAAATTC GAAAAAAACT AATAAACATT
TTTAATCCAT CATTCTTACC TAACAATCAA AACCAAAAAA ATATTCCAAT ATATCATTGG
CATGGAACAA AGTTAGATAG CCCCGACTGG AGTAGTTGGT CTCACACAGT TGCCTTTAGC
ATAAACAAAG GCAAAACTAA TCCTCTGGTC TGGATAGGTT TAAATGCATA TTCAAAAAGT
ATCGATTTCC CCTTACCAAA ATGTAAATAT AATTGGTTAA AAGTTATTGA TACCAGCGCA
CCTGAGATTT TCGAACCCTT AACAATTAAT GAAAAATCTG TTTCAATAAA GAGTAGAAGC
TCTTTATTAA TCATTTCGGA AGAAGTATTT GGGGCAAAAA ATAATATATT CTAA
|
|---|
| Protein sequence | MTHINKGNPF PLGSSLTAKG VNFSLIATNA AFVEILLFEK EDSISPKNIF KLDHNHNTGP
YWHAEIENLN EGCIYAFRIN QKNNGINNNY EKKVLLDPCS RGITGWGIYK RENALNTNDN
TNSCLKSVVC DRKLFNFEDY PRPKHSWEET IIYELHIRAF TESTDKDKSC FKKFLKKIPY
LKELGITTIE LLPVFCFDPT DAPNGLENFW GYSPINWFTP HFEYLSNESA EKNREEFRRL
VEECHKADIE VILDVVYNHT SEGDSQGPVI SWKGIDENLY YFIGKDKNYQ DVSGCGNTIA
ANRGLVRKLI IESLKCWASE LGVDGFRFDL GIALSRGENL SPLDNPPIFE DIECEPELID
IKFISEPWDC GGLYKLGDFP SKTTFTWNGH FRDDLRRFWK GDKDTAWNMS DKIKGTPSMY
KEDNIFPKSI NFITSHDGFT LKDLVTFNRK HNFANREQNR DGDNHNNSWN HGTEGPTKNL
LINDLRKRQQ RNLILSLLIS KGVPMILMGD EIGRSQGGNN NSWCQNNLLG WMNWDHDQQD
LELLEYSKYV IKIRKKLINI FNPSFLPNNQ NQKNIPIYHW HGTKLDSPDW SSWSHTVAFS
INKGKTNPLV WIGLNAYSKS IDFPLPKCKY NWLKVIDTSA PEIFEPLTIN EKSVSIKSRS
SLLIISEEVF GAKNNIF
|
|---|
| |