| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PMT9312_0961 |
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| Symbol | |
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| ID | 3765764 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Prochlorococcus marinus str. MIT 9312 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007577 |
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| Strand | + |
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| Start bp | 892268 |
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| End bp | 895792 |
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| Gene Length | 3525 bp |
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| Protein Length | 1174 aa |
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| Translation table | 11 |
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| GC content | 27% |
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| IMG OID | 637797485 |
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| Product | transcriptional-repair coupling factor |
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| Protein accession | YP_397457 |
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| Protein GI | 78779345 |
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| COG category | [K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG1197] Transcription-repair coupling factor (superfamily II helicase) |
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| TIGRFAM ID | [TIGR00580] transcription-repair coupling factor (mfd) |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.489301 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAATTTAA ATACTTTAGT TAATTATATT TCAAACTCAC AAATTACTTC TGAATTAATA
AAAAAAATTT CAAAAAATAA AGAATTAAAT ATTGTTGGCT CAAGTAGATA TGCAAAATCA
ATAATCCTAA ATAGCATAGC AAAAAAAGAA TATAAAAATA TATTATTAAT TTGTCCTAAT
ACAGAAATTG CCTACAAATG GATTGGTTAT TTTGAAAGTA TAAATGATAA AGCTGTTTTA
TATTATCCAC CAACAGAGCA TCTGCCATAC GCATCAATTA ATAAATCCAA AGAGATTGAA
TTTACTCAGC TTACTGTTTT ATCTAAATTA ATAAAAAAAG AGAAAAAAGA ACTTAATATT
GTTATATCAA CAGAGAGATC ACTACAACCT CATCTAATAA ATAAAAATTT ATTAACTGAA
AACAAGTTAG CTTTGCAAAA AGGTGTTCAA ATTGAGCTTC AAGATTTAGC AAATAAACTT
ACGTTGCTGG GTTATACAAA GGAAAATATT ACTTCTACAG AAGGATACTG GAGTAGAAGA
GGGGAAATAA TAGATATTTA TCCTGTCAAT AATGAGTTTC CTATAAGATT AGAATTTTTT
GATAATGTAA TTGAGAAAAT AAGAGAATAT GATCCACATA CACAAAAAAC ATTAGAAAAT
ATCAATAATA TTGAAATAAT ACATGCTGGA TTTGGTTTAC TAATAAAAGA TAAGTTAAAA
AATTTATCTA AAAATCATAT TTTTAATTCA GAAGATGTAA ATAAAAATAA CCTTGATCGT
TATTTAGGAA TAATTGAAAA AAAGCCCTCA AATATAATAG ATTTCATAGA TAAGGAAACA
ATTCTTGTAA TTGATGAATT AGAAGATTGT AAAAAATTTA CGAATAATTG GTATATAGAT
TCAGAAATTA ATTTTGATAA TTTTGCGAAT GAATTAAATG AAAACCTTAA AAATAATAAT
ATAAATCTAA AGGCTAAGCC TAATTTGCAT CTAAAGTTTG ACGAAATATT AAATTCACTG
GGAAATTTTA ATTTAATAAA GTTGTATGAA TTTGAATCTA AAGCCAATAT TCATAATAGG
TTTTTATTAA ACGATAAGAG ATTAAATTCA TACTCAAAAA ATATAGGAAA ATTAGCCAAA
GATATAAACA AAAATATAAA AAATAAAGAA AAAGTATGGA TCTTATCGGC ACAGCCATTG
AGAACTAAGA CTTTACTTTT TGAGCACGAA TGTAATACAA ACTTCTTAAA CAATCCTAAT
GATATTGATG AAGCATTTAA ATCAATTAAT AATTCAACTC CTTTAATAAT AAAAAATAAG
AACAATTATG AAATCGAGGG TTTTTATCTT CCAATTTGGA AAGTTGTCCT TATAACAGAT
AAAGAATTAT TTTCACAACA ATATCTTTTT AATAATGTAT TCATAAGAAG AAAAAAAAGA
AGTGTAAATT CAAATATAAA TGTGAATAAG ATTAGTCCAG GTGATTTTAT CGTTCATAAA
AATCATGGAA TAGGAAAATT TTTAAAAATA GAAAAAATCA ATATAACTGG AGATTCAAGA
GATTATTTAG TCATTCAGTA TCAAGATGGG AAGATAAGTG TGGCCGCTGA TCAATTAGGT
AGTGTTAACA GATATAGATC TAGTGGAAAA ATAAAGCCAA AAATAAATAA ATTAGGAGGG
ACCGAATGGG AAAGAATAAA AGATAAAAAC AAGAAACAAA TCAAAAAAGT TGCTGTCGAT
ATCCTAAAAC TTTATGCAAA GAGAGAAAAA TTAAAGGGGC ACATATACCC AGAAGATGGT
CCTTGGCAAG ATGAATTAGA GGAATCATTC CCTTATCAAC CAACACCAGA TCAAATTACT
GCTGTAAAAG AAATAAAATC TGATATGGAA AGCGATAAGC CAATGGACAG GTTAGTTTGT
GGAGATGTAG GATTTGGCAA AACAGAGGTC GCTGTTCGGG CAATTTTTAA GGCTATTACA
TCAGGCAAGC AGGTTATATT ACTAGCACCT ACAACAATAT TAGCTCAGCA ACATTGGAGA
ACAATAAATA ATAGATTTTC ACCTTACCCA ATAAAAGTAT CATTACTCAA TAGATTCAAA
ACCGTTAATG AGAGAAAAGA AATCTATGCA GGATTAAAAA ATAACAAAAT TGATTTAGTA
GTAGCAACGC ACCAAATTTT AGGGAAAGAA ATTGAAATAA AAAACTTAGG GTTACTTGTT
ATTGATGAAG AACAACGATT TGGAGTAAGG CAAAAGGAGA AAATTAAAAA AATTAAAACT
AACATAGACG TTTTAACTCT CTCGGCAACT CCAATTCCAA GAACTCTTTA TATGAGCTTA
TCTGGACTGA GACAAATGAG CTTACTAAAT ACTCCTCCTC CATCAAGAAG ATCAATAAAA
ACCTATTTAT CTGAAATAGA TATGGATGTT ATAAGAACTG CTATTAACCA AGAACTTGAT
AGGGGAGGTC AAATATTTTA TGTTCTTCCA AGAATTTCAG ATATTGATCA AGCAGTAAAC
AAATTAAAAA ATATGTTTCC GAACTTAAAA TTTATTATTG CTCATGGACA AATGAACGAA
ACAGAGCTTG AAAATAGCAT GATTTCCTTT AATAATGGAG AAGTAGATCT CATGATATGT
ACAACGATAA TTGAAAGTGG ATTAGACATC CCGAAGGTAA ATACAATAAT TATTGAAGAT
TCTCATAAAT TTGGACTTTC ACAACTTTAT CAATTAAGAG GAAGAGTTGG TAGAAGTGGT
ATACAAGCAC ACGCTTGGTT ATTTTATCCC AATTTAAATA AAATCAATGA TTCTGCAAAA
CAAAGATTGA AAGCGATAAA GGATTTTTCG GAACTAGGAA GTGGTTACCA ACTTGCAATG
AAAGATATGG AAATAAGAGG TGTTGGAAGT TTATTAGGAG AAGAACAAAG TGGAAAGGTT
AATGCTATTG GATATGATTT GTACATTGAA ATGCTCCACG AAGCTATTTC AGAAATTAGT
GGACAAGAAA TACCAGAAGT TAGTGACACA CAAATTGATC TGCAAATTAA TGCTTTTATA
CCTGCAACAT GGATATTAAA CAGGGAAGAA AAACTTGATG CTTACAAATC TGCGACTGAA
TGCTCTAACA ATAAAGAATT AACTGAATTA GCTAAAGACT GGATTAATAG ATATGGAACA
TTGCCCAAAC CTGTTGAGTC ATTAATTATG TTGATGAAAC TAAAATTAAT TGCTAAAAAA
TGCGGTTTTA ACAAAATAAA ACTTAAAAAG CCTAACATTA TTATTGAAAC AAAATTAAGA
AAATCTACTT TTAAAATACT TAAAAATTCA TTACCTAATA GTGTTCAAAA TAAATTTAAT
TTTAATGAAG GGGAGCTATG CTCCTTTATA ACCATAAGAG GTTTAGGAGT TACTGACATT
CAAAATCAAA TTGATCAATT AATGTATTGG TTTGGGTTAT TTATTGAAGA AATAAATAAT
TTTGAAAAAG ACCTAAATAT TAAAAAAGAA AAAATTATTA AATAA
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| Protein sequence | MNLNTLVNYI SNSQITSELI KKISKNKELN IVGSSRYAKS IILNSIAKKE YKNILLICPN
TEIAYKWIGY FESINDKAVL YYPPTEHLPY ASINKSKEIE FTQLTVLSKL IKKEKKELNI
VISTERSLQP HLINKNLLTE NKLALQKGVQ IELQDLANKL TLLGYTKENI TSTEGYWSRR
GEIIDIYPVN NEFPIRLEFF DNVIEKIREY DPHTQKTLEN INNIEIIHAG FGLLIKDKLK
NLSKNHIFNS EDVNKNNLDR YLGIIEKKPS NIIDFIDKET ILVIDELEDC KKFTNNWYID
SEINFDNFAN ELNENLKNNN INLKAKPNLH LKFDEILNSL GNFNLIKLYE FESKANIHNR
FLLNDKRLNS YSKNIGKLAK DINKNIKNKE KVWILSAQPL RTKTLLFEHE CNTNFLNNPN
DIDEAFKSIN NSTPLIIKNK NNYEIEGFYL PIWKVVLITD KELFSQQYLF NNVFIRRKKR
SVNSNINVNK ISPGDFIVHK NHGIGKFLKI EKINITGDSR DYLVIQYQDG KISVAADQLG
SVNRYRSSGK IKPKINKLGG TEWERIKDKN KKQIKKVAVD ILKLYAKREK LKGHIYPEDG
PWQDELEESF PYQPTPDQIT AVKEIKSDME SDKPMDRLVC GDVGFGKTEV AVRAIFKAIT
SGKQVILLAP TTILAQQHWR TINNRFSPYP IKVSLLNRFK TVNERKEIYA GLKNNKIDLV
VATHQILGKE IEIKNLGLLV IDEEQRFGVR QKEKIKKIKT NIDVLTLSAT PIPRTLYMSL
SGLRQMSLLN TPPPSRRSIK TYLSEIDMDV IRTAINQELD RGGQIFYVLP RISDIDQAVN
KLKNMFPNLK FIIAHGQMNE TELENSMISF NNGEVDLMIC TTIIESGLDI PKVNTIIIED
SHKFGLSQLY QLRGRVGRSG IQAHAWLFYP NLNKINDSAK QRLKAIKDFS ELGSGYQLAM
KDMEIRGVGS LLGEEQSGKV NAIGYDLYIE MLHEAISEIS GQEIPEVSDT QIDLQINAFI
PATWILNREE KLDAYKSATE CSNNKELTEL AKDWINRYGT LPKPVESLIM LMKLKLIAKK
CGFNKIKLKK PNIIIETKLR KSTFKILKNS LPNSVQNKFN FNEGELCSFI TIRGLGVTDI
QNQIDQLMYW FGLFIEEINN FEKDLNIKKE KIIK
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