| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PMT9312_0946 |
|---|
| Symbol | |
|---|
| ID | 3765749 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Prochlorococcus marinus str. MIT 9312 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007577 |
|---|
| Strand | - |
|---|
| Start bp | 878703 |
|---|
| End bp | 880457 |
|---|
| Gene Length | 1755 bp |
|---|
| Protein Length | 584 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 32% |
|---|
| IMG OID | 637797470 |
|---|
| Product | ATP-dependent metalloprotease FtsH |
|---|
| Protein accession | YP_397442 |
|---|
| Protein GI | 78779330 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG0465] ATP-dependent Zn proteases |
|---|
| TIGRFAM ID | [TIGR01241] ATP-dependent metalloprotease FtsH |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.344786 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGTTTAGAT CAAAATTCTC ATATTCAAAT TCTAGATCAA GTTATTCAGA TCTTCTAGAG
GATATAGAGG CGGGAAAAAT AGAATCAATA TTTTTCTATC CTAGACAAAG AGAAATTGAT
GTTCTGTATA AAAATGGCGA CAAATTTAAA ATACCTATCC TTTACAACGA TCAATTAATC
CTAGAAAAGG CTACTGAAAA TAAAGTTGAA CTTACAGTTA ATAATAGTAG AAAAGAAGCC
TCAGCTGCTA ATTCATTTGC TTCAATCAGT CTTTTCCTGA TTTTTATATT AGCTATAGTC
CTAATCTTGA GGAGTACATC AAAATTAGCT TCTAGAGCCT TTGGTTTTAC CAAAAATAAA
GCTAAATTTC TAACTATTGA TGATGTTGAC ACGAGATTCG ATGATGTAGC TGGTGTTCCT
GAAGCCGCGG AGGAATTAAA AGAGGTAATA ACTTTTTTGA AAGAACCAAA AAAATTTGAA
AATTTAGGAG CAAAAGTTCC TAAGGGAGTA CTTTTAATTG GCCCTCCTGG AACAGGTAAA
ACATTATTGG CTAAAGCAAT TGCCGGTGAA TCAGGAGTTC CTTTTCTCTC AATATCGGCA
TCAGAATTTG TAGAACTTTT TGTTGGTGTT GGCGCAAGCC GAGTCCGGGA GTTATTTTTT
AAGGCTAAAG AAAAATCTCC TTGCATAATT TTTATTGATG AAATTGATTC TATTGGTAGG
CAAAGAGGAT CTGGGATTGG AGGTGGAAAT GATGAAAGAG AACAAACCCT TAATCAGCTT
CTAACTGAGT TGGATGGTTT TGCCGATAAT TCAGGGATTA TTGTTTTAGC CGCAACAAAT
AGACCAGATA TTTTGGATGC AGCATTATTA AGACCAGGAA GATTTGATAG GAAAATAGAA
GTTATGCTCC CAGATTTAGA TGGAAGAAAA AAAATTCTTT CAGTTCATTC ACTTCCAAAA
CCACTTTCAA AGGAAGTTGA CTTAGGATAT TGGGCTTCAA GAACAGTTGG ATTTTCTGGA
GCAGATCTTG CAAATTTGAT GAACGAGAGT GCTATTCATT GTGCAAGAGA TGAATCAAAA
TTAATCAGTG ATCTTCATAT AGAAAATGCT CTTGATAAAA TTACAATTGG CCTGAGAAGT
TCTTTAACAA GTTCTTCAAA TATGAAGAAA ATTATTGCTT ATAACGAAGT AGGCAGAGCA
ATTGTTTCTG CTGTGAGAAA TGGAATTGAA TCAGTTGATA AAATAACAAT TTTACCTAGA
TCTGGATCTC TAGGAGGATA TACAAAAATG TGCCCTGACG AAGATGTAAT TTCTAGTGGC
TTGATTTCAA AAAAATTATT ATTTTCGAAA ATTGAAATCG CTCTAGCAGG AAGAGCCGCA
GAAACGATAG TTTTTGGTGA AAGTGAAATT ACACAATGCT CCATAAATGA TATCTCTTAT
GCGACGAATA TCGTAAGAGA AATGGTTACA AAATATGGAT TTTCAATTAT TGGTCCAATT
TCAATGGACT CTGATAATAA TGAATTGTTT TTGGGAGATG GATTATTTAC AAGAAAGCCT
CTCATAGCAG AAAATACTTG TTCTAGAATA GATAATGAAA TTATAAAAAT TTCTAAAAAT
TCATTAAATA ATTCAATAGA AATTTTGAAG AAAAATAGAG TCTTACTAGA TAAATTAGTT
GATATACTTT TAATTCAAGA AACTATAGAT AAAAAAGTTT TTAAATTAAC AACTTCTAAA
TTGTTGAAAG TTTGA
|
|---|
| Protein sequence | MFRSKFSYSN SRSSYSDLLE DIEAGKIESI FFYPRQREID VLYKNGDKFK IPILYNDQLI
LEKATENKVE LTVNNSRKEA SAANSFASIS LFLIFILAIV LILRSTSKLA SRAFGFTKNK
AKFLTIDDVD TRFDDVAGVP EAAEELKEVI TFLKEPKKFE NLGAKVPKGV LLIGPPGTGK
TLLAKAIAGE SGVPFLSISA SEFVELFVGV GASRVRELFF KAKEKSPCII FIDEIDSIGR
QRGSGIGGGN DEREQTLNQL LTELDGFADN SGIIVLAATN RPDILDAALL RPGRFDRKIE
VMLPDLDGRK KILSVHSLPK PLSKEVDLGY WASRTVGFSG ADLANLMNES AIHCARDESK
LISDLHIENA LDKITIGLRS SLTSSSNMKK IIAYNEVGRA IVSAVRNGIE SVDKITILPR
SGSLGGYTKM CPDEDVISSG LISKKLLFSK IEIALAGRAA ETIVFGESEI TQCSINDISY
ATNIVREMVT KYGFSIIGPI SMDSDNNELF LGDGLFTRKP LIAENTCSRI DNEIIKISKN
SLNNSIEILK KNRVLLDKLV DILLIQETID KKVFKLTTSK LLKV
|
|---|
| |