| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PMT9312_0583 |
|---|
| Symbol | hemE |
|---|
| ID | 3765383 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Prochlorococcus marinus str. MIT 9312 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007577 |
|---|
| Strand | - |
|---|
| Start bp | 542445 |
|---|
| End bp | 543485 |
|---|
| Gene Length | 1041 bp |
|---|
| Protein Length | 346 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 35% |
|---|
| IMG OID | 637797104 |
|---|
| Product | uroporphyrinogen decarboxylase |
|---|
| Protein accession | YP_397080 |
|---|
| Protein GI | 78778968 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0407] Uroporphyrinogen-III decarboxylase |
|---|
| TIGRFAM ID | [TIGR01464] uroporphyrinogen decarboxylase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGGTGAAA ATTTACCACT ACTACTTTCT GCCGCATTAG GTAAAAAAGT AACTAGACCT
CCAGTATGGA TGATGAGGCA AGCAGGAAGA TATATGAAAA TCTATAGAGA TTTAAGGGAG
CGTTACCCAA GCTTTAGAGA GAGGTCTGAA AATCCAGAAC TATCATATGA GATATCAATG
CAGCCTTTTC ATGCTTTCAA ACCGGATGGT GTGATCCTTT TTTCAGATAT TCTCACACCT
CTTCCAGGAA TGGGTATAAA TTTTGAGATC ATAGAAAGTA AAGGTCCAAT AATTGAGGAC
CCAATAAGAA CTCTTAGCCA GATAGAAAGT TTAAAAGAAT TAAATCCAAG TGAGAGTTTA
AGTTTTGTTG GGCAAGTTCT ATCTTCACTA AAAAAAGATG TAAATAATGA GGCAACAGTT
TTAGGTTTTG TTGGTGCACC TTGGACCCTG GCTGCATATG TAGTTGAAGG TAAAAGCAGT
AAAAACTATT CTTTAATAAA ATCAATGGCT TTTAAAGAAC CAGATTTACT TCACAAACTT
CTTGATCATT TTGCAAAATC TATTGGTGAA TATCTTAAAT TTCAAATAAA ATCTGGAGCG
CAAGTAGTAC AAATTTTTGA TTCATGGGCA GGTCAACTAA GCCCACAAGA TTATGATATC
TTTGCTGGGC CTTATCAAAA AAAAGTTGTT GACATTGTAA AAGAGGAGTA CCCTGACACA
CCTGTTATTC TCTATATTTC AGGAAGTGCA GGCGTAATAG AAAGAATGGC AAAAACTGGG
GTAGATATAA TTTCATTAGA CTGGACAGTA GATATTGAAG AGGCTTGTAA AAGAATCCCT
GATGAGATAG GCATCCAAGG TAATGTTGAC CCTGGCATTT TATTTGGAAA TAAAGAATCA
ATAAAAGAAA GGATCGATGA TACCTTTAAT AAAATTAAAG ATAGGAAATA TATTCTTAAT
TTAGGTCATG GGATTTTACC TGGCACTCCA GAAGAAAATG CTCAAACATT TTTTGAGCAT
GGGAAAAAAC TAACTTACTA G
|
|---|
| Protein sequence | MGENLPLLLS AALGKKVTRP PVWMMRQAGR YMKIYRDLRE RYPSFRERSE NPELSYEISM
QPFHAFKPDG VILFSDILTP LPGMGINFEI IESKGPIIED PIRTLSQIES LKELNPSESL
SFVGQVLSSL KKDVNNEATV LGFVGAPWTL AAYVVEGKSS KNYSLIKSMA FKEPDLLHKL
LDHFAKSIGE YLKFQIKSGA QVVQIFDSWA GQLSPQDYDI FAGPYQKKVV DIVKEEYPDT
PVILYISGSA GVIERMAKTG VDIISLDWTV DIEEACKRIP DEIGIQGNVD PGILFGNKES
IKERIDDTFN KIKDRKYILN LGHGILPGTP EENAQTFFEH GKKLTY
|
|---|
| |