| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tcr_2134 |
|---|
| Symbol | |
|---|
| ID | 3761299 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thiomicrospira crunogena XCL-2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007520 |
|---|
| Strand | + |
|---|
| Start bp | 2355683 |
|---|
| End bp | 2356534 |
|---|
| Gene Length | 852 bp |
|---|
| Protein Length | 283 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 42% |
|---|
| IMG OID | 637786883 |
|---|
| Product | sigma 32 (RpoH) |
|---|
| Protein accession | YP_392396 |
|---|
| Protein GI | 78486471 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
|---|
| TIGRFAM ID | [TIGR02392] alternative sigma factor RpoH
[TIGR02937] RNA polymerase sigma factor, sigma-70 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 1 |
|---|
| Plasmid unclonability p-value | 0.000000000000728638 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACAAATC AATTGATTCC ATTTGCAAAC AATCTTACTC CTGGACAGAA TATTGAAAGT
TATTTGAGAA CGGTTCAAAC CCTACCTCAA CTTTCAGCTG ACGAAGAAAG AGAGTTGGCA
GAAAAGCTAT ATCACGACAA AGATTTAAAT GCAGCAAGAC AGCTCATTTT ATCTTCGTTG
CGTTACGTGG TTCCGATTGC ACGTTCTTAC AATGGATATG GTCTGCCATT AAACGACCTG
ATCCAGGAAG GTAATATCGG CTTGATGAAA GCGGTTAAAC GCTTCAATCC AGCTGAAAAA
GTACGTTTAA TGACCTTTGC GGTTCATTGG GTCCGTGCCG AAATCAATGA ATACGTGATT
AAAAACTGGC GCATTGTCAA AACGGCTACG ACCAAAGCAC AACGCAAACT CTTTTTTAAA
TTGCGCAGCA CTAAAAAATC TCTTGAATGG CTGGGAGATA AAGATGCCGA TACGATTGCA
AAAGAGCTCG GGGTGACTCG CAAAGATGTT CTTGAAATGG AAACGCGTCT TTACGGTCAA
GATATGTCTG TCGACCTATC ACCCGATGAG GAAGAAGCGA ACTCAAAGAC ATATCCAGTC
CTGGTCAGCC AAGAACTGGA TCCTGAAACG CAGTTGGCAA ATGACTCGCA ATCTGACCAT
GAGTTAGGCA AAATGCATCA GGCCTTAAAG CAATTAGATC AGCGTAGCCG AGATATTTTG
CAACAACGCT GGCTCAGTGA AGATAAAACG GGCTTAAAAG CTTTGTCTGA AAAATACGGC
GTTTCGATGG AACGTATTCG CCAAATCGAA CAGCAAGCTA TCAAAACATT ACATGCAAGC
ATGACCGCTT AA
|
|---|
| Protein sequence | MTNQLIPFAN NLTPGQNIES YLRTVQTLPQ LSADEERELA EKLYHDKDLN AARQLILSSL
RYVVPIARSY NGYGLPLNDL IQEGNIGLMK AVKRFNPAEK VRLMTFAVHW VRAEINEYVI
KNWRIVKTAT TKAQRKLFFK LRSTKKSLEW LGDKDADTIA KELGVTRKDV LEMETRLYGQ
DMSVDLSPDE EEANSKTYPV LVSQELDPET QLANDSQSDH ELGKMHQALK QLDQRSRDIL
QQRWLSEDKT GLKALSEKYG VSMERIRQIE QQAIKTLHAS MTA
|
|---|
| |