| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tcr_1143 |
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| Symbol | |
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| ID | 3762131 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Thiomicrospira crunogena XCL-2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007520 |
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| Strand | - |
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| Start bp | 1238037 |
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| End bp | 1239635 |
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| Gene Length | 1599 bp |
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| Protein Length | 532 aa |
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| Translation table | 11 |
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| GC content | 38% |
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| IMG OID | 637785864 |
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| Product | diguanylate cyclase |
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| Protein accession | YP_391412 |
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| Protein GI | 78485487 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 29 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCCAACGT CTTCAAAACA GCATCGATTT ATAAAATGGC GCTCGCTTTC GTCAAAGCGC
CTCGCGTTTC TGGTCGCAAT AAGTGTGTTT TTATTTTTAA GTGGCATGAG TTTTTGGATT
GGGTTTTCTA ATTACACCAC CCAAAAACAA CATCTGATCA ATTACGACAG TACCTATGAA
ATCAATAGTT TTAAAGCCAG TAGAAAAGCG CTTAACATTC ACGCCAAAAC CATTTTTCAA
ACGTCTATTT ACAAAGATGA CATCTTCAAG CTGATGGCTA AAGCTTATCA TGGTGATGCA
AACGTGAAAG ATGACGTCAG AAAAGAGCTT TACAATAAAC TCCACCCCAT CTACCAACTA
TTACAGCTTG AACATATCCG TCAGCTTCAT TTTCACCTTC CCGGGGGGAT CAGTTTTTTA
CGATTTCATC GTCCAGAAAA GTACGGCGAT AACATTTCAA GCGTACGCTA CAGCATCGTA
CAAGTAAATA AAACAAAATC GCCTATTTCG GGATTTGAAG AAGGTCGTAT TTTCAATGGC
TTCCGCCATG TTTTTCCGAT TACTTATAAA GATGAGCTGG TCGGAACGGT GGAAATCTCT
TTTTCGGTGG ATGCCATCTA TGAACTGATG ACGCACAGCA ATAAAGAATT TTACAGTTTG
CTACTAAAAA AAGACTTGGT TAAGAAAAAA GTCTTTTCCA GCGAACGCCA AAACTACGCC
CCTTCCACAA TTTCAGACAA CTTTTTAGTG GATAAAGAAG TCCACGGGAT GAAATCACAC
ATTAACGCCA TTCCTTTCAC TAAAATCCAA AAAATCAACC AGGCTTTACA CCAAGAATTC
ATACAGCAAC TTGATCGACA TTGCAGCAGT TGTAACTTCA TCGTCAATAT TGATAGAACA
TTTTATTTAG TTAATTTCTT TCAACTAGAA AATACCAAAG GTAACCCTGT GGGTTATATA
GTGAATTATC AGGAAGAACC AGGTATCAAA TTGATTACCG AAAACTTTTT ACAGCACCTA
TTAATCAATG AATTCCTCTT GCTGATTATC AGTTTATTGG TGTTCTTTTT TATTCGAAAT
CAAATTCGCC AGCGACGTTT ATTGCATAAA ATGGCTAAAA CGGACAACCT GACCGGTTTA
CCGAATAGAA GTATTTTTAA GCGCGCTTTA AATGAAAACA TCAAACGAAG CAATAAAAAA
CAGTGGCCAT TAAGTTTAAT TTTCTTCGAC ATCGATCATT TTAAAAAAAT TAACGATACA
TACGGCCATT TAGTGGGCGA TAAAGTGCTC AAAAAAGTTG CTCGAAACAT CGAAGATGGA
TTGACCCATA AAGATATTTT TGCACGTTGG GGCGGAGAAG AATTTGTTAT TTTATTACCG
AATACCGACT TGCAAGATGC CGAAAAGGTC GCGGAAAGAC TTCGACAAAA ACTGGAAGCA
ATGACAGACT TTGACATCAC AATCACCTCC AGCTTTGGTG TTTCGGATCT TAGACCTGAT
GACACGGCCG AAAGTTTTAT GCAACGCGGA GATGAAATGC TCTATCGCTC AAAAGAGCAA
GGTCGAAATC GTGTCACAGC CAATTCACCA TTGAATTGA
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| Protein sequence | MPTSSKQHRF IKWRSLSSKR LAFLVAISVF LFLSGMSFWI GFSNYTTQKQ HLINYDSTYE
INSFKASRKA LNIHAKTIFQ TSIYKDDIFK LMAKAYHGDA NVKDDVRKEL YNKLHPIYQL
LQLEHIRQLH FHLPGGISFL RFHRPEKYGD NISSVRYSIV QVNKTKSPIS GFEEGRIFNG
FRHVFPITYK DELVGTVEIS FSVDAIYELM THSNKEFYSL LLKKDLVKKK VFSSERQNYA
PSTISDNFLV DKEVHGMKSH INAIPFTKIQ KINQALHQEF IQQLDRHCSS CNFIVNIDRT
FYLVNFFQLE NTKGNPVGYI VNYQEEPGIK LITENFLQHL LINEFLLLII SLLVFFFIRN
QIRQRRLLHK MAKTDNLTGL PNRSIFKRAL NENIKRSNKK QWPLSLIFFD IDHFKKINDT
YGHLVGDKVL KKVARNIEDG LTHKDIFARW GGEEFVILLP NTDLQDAEKV AERLRQKLEA
MTDFDITITS SFGVSDLRPD DTAESFMQRG DEMLYRSKEQ GRNRVTANSP LN
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