| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tcr_0658 |
|---|
| Symbol | |
|---|
| ID | 3761349 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thiomicrospira crunogena XCL-2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007520 |
|---|
| Strand | - |
|---|
| Start bp | 735046 |
|---|
| End bp | 736992 |
|---|
| Gene Length | 1947 bp |
|---|
| Protein Length | 648 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 637785371 |
|---|
| Product | C-5 cytosine-specific DNA methylase |
|---|
| Protein accession | YP_390928 |
|---|
| Protein GI | 78485003 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0270] Site-specific DNA methylase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 0.538294 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTATAAAA GAACAATAAA CCACTTTCAC TTATTTTGCG GATTGGGTGG TGGTGCCAAA
GGTTTCAACA TGGGCCAAGC AAAAGTCGGT CAGGTTGAAG CAGAATTCCG CTGTATTGGT
GGCATTGACT CCGATGCTGC AGCAATACAA GACTTCAATC AGCTTGCCGG TGCAAAAGGC
ACTGTCATGG ACTTATTCGA TGCTTCCCAA TACCTTGATT GGCATGGTCA TCTTCCACCA
GAAGACTGGA AAGAAGCAAC ACCGGAAGAT ATTCGCCGAG CTGCTGGCTA CGAACGCCCA
AATATCGTAT TCACCAGCCC ACCATGTAAA GGGTTTTCTG GTCTGTTATC ACAAACCAAG
AGTGGAACAG ACAAGTACCA AGCATTAAAC CGACTTACCA CCCGTGGAAT CAAGCTTGCA
CTTGAGGCAT GGCAAGATGA TCCGGTTGAG TTCTTCATCC TTGAAAACGT ACCACGCATT
GCAACACGTG GCCGCTACCT GATAGATGAA ATTATTGAAC TTCTTGAATC ACACGGATAT
GCCGTTGCCG AAACAACGCA TGACTGTGGT GAAATTGGCG GCTTGGCTCA AAGTCGCAAG
CGCTTCCTTC TGGTTGCACG TCATCAAGAA AAAATCCCGC CATTCCTTTA TGAGCCAGAA
ACAAAGTCAC TCAAAAAAGT CGGTGACATT CTTGAAAACC TTCCAATGCC AGGAGATGAA
AGTGCCGGGC CTATGCACCG CATTCCAAAC CTACAATGGA AAACATGGGT GCGCCTTGCA
TTTGTTGAAG CCGGTAAGGA TTGGCGTTCA CTCCAAAACC TAAACGTACA GAATGGGTTT
TTAACCGACT TTGGCATCAT GCCGAACGAG CAATATCACA ACTCCGTATA TGGCGTTAAA
AAGTGGGAAG AACCAACAGG AACAGTTGCT GTACGGTCAA CACCAAGCAA TGGTGCCTAT
TCAGTTGCAG ATCCACGATG GGCCGGTACC CATAAATTCG GTCAGCTTGG CGTCAGAAAC
TTTAATGAAA CCAGTGGCGC CGTCAGCGGT CAATCTGCAG TTGGTGGTGG ACGCTATGCC
ATAGCTGATC CACGCATCAA TGGTGAACGT CATAAAAACG TATTCAAAGT TGTTCAAATG
AAAGGACACT CACCGACTGT AACATCCGGT ACTGGACCAA CAGCAGGTGG ATTGACGATT
GCAGACCCAA GAATGCCAGA TACCAACAAA AACCGTCACA ATGGATTCTA TCGCGTTGTT
GACTTCAATG GACAGGCTCA CACCGTAACA GGTGCAAAGC ACGTTGCCGG CACTGCTATG
TCTGTTGCTG ACCCTAGAGG TGGAAAGTTT GGCGGAAAAT ACTCAGTAAC AGATTTTGAC
AAGCATGCCA AAACCGTTAT TTCTGGAAGC ACTACCGGAC AAGGCGCATT TGCTGTAGCT
GACCCACGAC CAGGACTTGG AAAAGATGGA AATCGTGAAC ATTACCAAAC CGCCGGTCAT
TATGGTGTCC GACCATGGGA TTCACACTCC TATGCAGTAC CAGGTAAAGC AAAACTTGAT
CGCGGCCACT GGTCCGTCGC CGACCCACGC ATCCAAGATG CTGAAAACTC CACACTACCA
AGCGAAAAAG ATAAAGGTGC GTTCATTATC CAGTCGCTAG ACAACACTTG GCACCGCCCA
TTTACCACGC TAGAACTAGC TGCGCTTCAA GGTCTGGTTG ACCCGGAAGA ATTTCTGCAC
CTATTCGGCG GCTCAGACTC TGCATGGCGC GAACGTATTG GCAATGCAGT ACCGGCACCA
ACCGCAGCGG CCATTGCATC CGTAATGGGG CAAACAATCC TACTCGCAGA AGCCGGCGAA
ACATTCATGC TGAGTGCAAT GCCGATATGG GTACAGCCGT TGGTAGTTTC AGCAAGCGTT
GAAAATCGAA ACTGGGCAAC TATTTAA
|
|---|
| Protein sequence | MYKRTINHFH LFCGLGGGAK GFNMGQAKVG QVEAEFRCIG GIDSDAAAIQ DFNQLAGAKG
TVMDLFDASQ YLDWHGHLPP EDWKEATPED IRRAAGYERP NIVFTSPPCK GFSGLLSQTK
SGTDKYQALN RLTTRGIKLA LEAWQDDPVE FFILENVPRI ATRGRYLIDE IIELLESHGY
AVAETTHDCG EIGGLAQSRK RFLLVARHQE KIPPFLYEPE TKSLKKVGDI LENLPMPGDE
SAGPMHRIPN LQWKTWVRLA FVEAGKDWRS LQNLNVQNGF LTDFGIMPNE QYHNSVYGVK
KWEEPTGTVA VRSTPSNGAY SVADPRWAGT HKFGQLGVRN FNETSGAVSG QSAVGGGRYA
IADPRINGER HKNVFKVVQM KGHSPTVTSG TGPTAGGLTI ADPRMPDTNK NRHNGFYRVV
DFNGQAHTVT GAKHVAGTAM SVADPRGGKF GGKYSVTDFD KHAKTVISGS TTGQGAFAVA
DPRPGLGKDG NREHYQTAGH YGVRPWDSHS YAVPGKAKLD RGHWSVADPR IQDAENSTLP
SEKDKGAFII QSLDNTWHRP FTTLELAALQ GLVDPEEFLH LFGGSDSAWR ERIGNAVPAP
TAAAIASVMG QTILLAEAGE TFMLSAMPIW VQPLVVSASV ENRNWATI
|
|---|
| |