Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Tcr_0334 |
Symbol | |
ID | 3762359 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Thiomicrospira crunogena XCL-2 |
Kingdom | Bacteria |
Replicon accession | NC_007520 |
Strand | + |
Start bp | 376764 |
End bp | 379991 |
Gene Length | 3228 bp |
Protein Length | 1075 aa |
Translation table | 11 |
GC content | 40% |
IMG OID | 637785043 |
Product | HsdR family type I site-specific deoxyribonuclease |
Protein accession | YP_390604 |
Protein GI | 78484679 |
COG category | [V] Defense mechanisms |
COG ID | [COG0610] Type I site-specific restriction-modification system, R (restriction) subunit and related helicases |
TIGRFAM ID | [TIGR00348] type I site-specific deoxyribonuclease, HsdR family |
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Plasmid Coverage information |
Num covering plasmid clones | 25 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAACACCA TGACCGAAGA TACCCTTGTT CAGCAAACGA CTGCCAGCTA TTTGGTCGAC ACTCTTAAAT GGGATGAATC GATTAATGGC ATGTATGAAA AGCTGGGTAA AGAAGGGTCT TTGGGGCGTG AATCTGAAAA AGAGATGGTA TTAACCCGTT ATTTAGGCGA GGCCTTAATG CGGTTAAATC CTGGCTTTCC TATGGAGGCA TATCAAGATG CCATTCGGCA AATTATAGAA GTGAACTTGT CTCTGTCTTT ATTGGGGATT AACCAAGATA AGGACAAACT TTATAAAAGT CGTGTACAGG TCTCTTTTAA GAATGAAAAA GGCGAGCGTA AACAGAAGTC ATTAAAAATC TTTGATTTTG ATAACCCAGA TAACAACCAC TTTTTAGTGG TGCGTGAGCT TTGGGTGCAA GGTGATATAT ATCGTCGTCG TGCTGACTTG GTCGGCTTTG TAAATGGTAT TCCATTGGTG TTTATGGAGG TTAAAAACCT GCATAAAGAA GTTAAAGCCG CTTATGAGCA AAACTTTAAA GATTATCTAG ATACCGTACC GCATTTGTTT CATCACAATG CGTTTGTGAT TTTGGGGAAT GGGGTAGATG CCAAGATTGG TTCAGTCTCA TCTAAGTTTG AACACTTTAA CGATTGGAAG CGTTTGCACG AAGAAGAGCC TGGCGTTGTG AATATGGAAA CCTTGTTAAA GGGTGTGTGC AATAAAGCCA ATTTACTCGA TCTGTTTGAG AACTACACCA TCTTTGATGA CTCTAGCGGC AAACTAATCA AAATTGTGGC ACGTAACCAC CAATTTTTAG GGGTGAATCG TGCGGTGGAT GCAGTTAAAA ACCGTGAAAG TTTAGCGGGT AAGCTTGGGG TTTTTTGGCA TACTCAAGGA TCGGGAAAAT CTTATTCTAT CGTTTTCTTC GCCAAAAAAG TTCACCGTAA ATTAGGCGGT AACTACACCT TTATGGTGCT GACAGATCGC GAAGATTTAG ACAGCCAAAT TTATAAAACT TTTGCCGGTA TAGGGTTGGT GGATAACGAT AAAGATCCTT GCCGAGCTTC AAGTGGTAAA CATTTAGATG AATTGCTTGG TCAACATAAG TCTTATGTGT TTTCGTTGAT TCAAAAGTTC AATGACCAGA ATATGACAGG TTCTGATCGT GATGACATTA TTGTTATAAC GGATGAGGCG CATCGTACCC AGTATGGGTC TTTGTCTTTA AACATGCGAA ATGCGTTACC GAATGCGAGC TTTATTGGCT TTACTGGAAC CCCGCTATTA AAAGATGATG AGATTACTCG CCGCGTCTTT GGTGACTATG TTTCAACTTA TGACTTTCAA CGTGCCGTAG AAGATAATGC GACTGTGCCG CTTTATTATG ATGCACGTGG TGATAAGTTG GTTTTTATTA ATGATGCAGG TGAAGAGTCT AAGGTGGCTG ATCCTAAAGG CATTAATGAG AAGATTGCCG AGAAGCTAGA AGAGTTAGAA ATTGATGATG TTGATGTAGC TCAACGTTTG GAAAGAGAGT TAAAACGAGA TTATCACATT TTAACTTCTA GTAGCCGTTT AGAACAAATT GCCAAGGATT TTGTGGAGCA CTATTCCGAA GGGTGGGAAA GCGGCAAGGC AATGTTTGTT TGCATTGATA AAGTCACCAG TGTTCGTATG CACCAACTGA TTGATAAATA TTGGCAAGAA CGCATTACCT ATCTCCAAAA ACAGATTGAT GGGGTGGCTT ATGATGAGCA AGAAACCATT TTTAGAGAAC GCCAACTTTC TTGGATGAGA GAAACACAAA TGGCGGTGGT CGTCAGTGAA GAGCAAGGTG AAGTTGAGAA ATTCAAGAAG TGGGATTTAG ATATTCTGCC TCACCGTAAA CTGATAAAAG AAGGTTTTAT TGGTAGTGAT GGTAAACGCA TTGATCTAGA ACAAGCGTTT AAAAAAGATG AGCATCCCTT TAGGGTGGCA ATAGTCTGTG CTATGTGGCT GACAGGGTTT GATGTACCAA CATTATCAAC CTTGTATCTA GATAAGCCTT TAAAGGCACA TACACTGATG CAAGCCATTG CACGAGCAAA CCGTGTAGCA GAAGGCAAGA ACAATGGCTT AATTGTCGAT TATTGTGGCA TCTTAAAGAA TTTGAGAAAA GCCTTGGCTG ATTTTGGCGG TGCAACAGAT GAAGGTAGAA CCGATGGCGG TGAGCATGAC CCTGCAAGAC CACAAGAAGA GTTGCTGGTT GATTTAGCTG AGTCGATTGA TTTAGTGAAA AGCTTCTTAA AAGATCGCTA TGTTGAGCTT TCTTCCATTA CTGAATCAGA GGGTTTTGCT CGAAATGCCT CTATTGTTGC AGCCAAAGAA GTGATTAATG AAAACGATCA AACTCGTAAA CAATACGAAG TGACAGCTAG AGAAGTCTTT AAGAAGTTCA AAGCCTGCAT CAATATACGA CCTGAAATTA ACGATTATCG CTCGGATCGT GATGCAATAA ATATCATCTA TCAATCGTTA CAAGATGACC GTGAAAAGGC CGATATTAGT CATATTATTA AAGAGCTTCA CTTGATTGTT GATGAATCGA TAGATGTCAC GATGTCTGGT TCTGAAGATA GCCATTTGTA TGATATTAGT AAAATCGATT TTGAAAAGTT AAAACAAGAG TTTGCACGAT CCGATAAAAA GCAGACTGTA GTTGCTAACT TAAAAGATGC GATAGCTCAG AAACTAGCTG ATATGCTTAA ACAAAACCCT TCACGAACGG ATTTTCAAAA ACGATATGAA GAGATTGTTG ATGAATACAA CAATGAAAAA GATCGAGTAA CAATTGAAAA GACGTTTGAG GCGTTGATGA TACTGGAAGG TGAACTGACC GAAGAGCAGG AGCGTGCGGT TCGGGAAAAC TTGGATGAAG AATCGCTGGT GGTGTTTGAT TTATTGAGCA AGCCTGATCT AACGCCTAAA GACATTAAAC TGATTAAGGC GGTGGCGGTT GAGCTGCTTG GGAAGTTAAA AGCCGAGAAG CTTAAAGTTG ACAATTGGCG TGAAAAACAA GCGACCCGTG ATGCCGTCAA ACAAACTATT TATGATTTCT TGTACGATGA ACGCACCGGC TTGCCGGAAA GCTATGAAGT CGATGAGATT GAAACGGTGA CCGAAAACCT GTTTACCCAT GTTTATAGGG TTTATCCAGC CGTGCCGTCT CCAGTGTATG CATATTAG
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Protein sequence | MNTMTEDTLV QQTTASYLVD TLKWDESING MYEKLGKEGS LGRESEKEMV LTRYLGEALM RLNPGFPMEA YQDAIRQIIE VNLSLSLLGI NQDKDKLYKS RVQVSFKNEK GERKQKSLKI FDFDNPDNNH FLVVRELWVQ GDIYRRRADL VGFVNGIPLV FMEVKNLHKE VKAAYEQNFK DYLDTVPHLF HHNAFVILGN GVDAKIGSVS SKFEHFNDWK RLHEEEPGVV NMETLLKGVC NKANLLDLFE NYTIFDDSSG KLIKIVARNH QFLGVNRAVD AVKNRESLAG KLGVFWHTQG SGKSYSIVFF AKKVHRKLGG NYTFMVLTDR EDLDSQIYKT FAGIGLVDND KDPCRASSGK HLDELLGQHK SYVFSLIQKF NDQNMTGSDR DDIIVITDEA HRTQYGSLSL NMRNALPNAS FIGFTGTPLL KDDEITRRVF GDYVSTYDFQ RAVEDNATVP LYYDARGDKL VFINDAGEES KVADPKGINE KIAEKLEELE IDDVDVAQRL ERELKRDYHI LTSSSRLEQI AKDFVEHYSE GWESGKAMFV CIDKVTSVRM HQLIDKYWQE RITYLQKQID GVAYDEQETI FRERQLSWMR ETQMAVVVSE EQGEVEKFKK WDLDILPHRK LIKEGFIGSD GKRIDLEQAF KKDEHPFRVA IVCAMWLTGF DVPTLSTLYL DKPLKAHTLM QAIARANRVA EGKNNGLIVD YCGILKNLRK ALADFGGATD EGRTDGGEHD PARPQEELLV DLAESIDLVK SFLKDRYVEL SSITESEGFA RNASIVAAKE VINENDQTRK QYEVTAREVF KKFKACINIR PEINDYRSDR DAINIIYQSL QDDREKADIS HIIKELHLIV DESIDVTMSG SEDSHLYDIS KIDFEKLKQE FARSDKKQTV VANLKDAIAQ KLADMLKQNP SRTDFQKRYE EIVDEYNNEK DRVTIEKTFE ALMILEGELT EEQERAVREN LDEESLVVFD LLSKPDLTPK DIKLIKAVAV ELLGKLKAEK LKVDNWREKQ ATRDAVKQTI YDFLYDERTG LPESYEVDEI ETVTENLFTH VYRVYPAVPS PVYAY
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