| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tcr_0242 |
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| Symbol | |
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| ID | 3761507 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Thiomicrospira crunogena XCL-2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007520 |
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| Strand | + |
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| Start bp | 287092 |
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| End bp | 288336 |
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| Gene Length | 1245 bp |
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| Protein Length | 414 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 637784947 |
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| Product | secretion protein HlyD |
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| Protein accession | YP_390512 |
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| Protein GI | 78484587 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1566] Multidrug resistance efflux pump |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.000000372515 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCTTTAA CTGGCTTAAA AAATCGTTTG AAACCAGCGA TGGTGCCATT GCTCATTTTA
GTGGGTGTGG TTGGCATTTT TATTTTTTTT AAGGCCACCA AGCCGACACA GCCGCCTGTG
CAGATTCAGC AAAAAGTTTG GCCTATTCAG GTAATGAGTG TTCAAAAACA AAGCTTATCA
CGCGTTCAAA CGCTCTATGG CAAGGTCGAA TCCTTTCGTT TGGTGGACGT TTCTTCACCC
GTGGCTGGGG TTGTTTCTGA GTTACCGGTC AAAGCGGGAG ACAACTTTGA AAAAGGCATG
AAGCTGGTCG CTTTGGCCGA CTCGGATCTG GAGTTGCCTT TTCAAATCGC GAAAGCCGAT
GTGGCGGATA CTCAGGCACA ATTGAATCTT GAAAAGCTGG CTTATGATGC CAATCAAAAA
CGACTGGAGT TTGAGAAAAA AGTCTTAGCC CTTAAAGAAA GGGACGTGGA ACGTAATACA
CAACTCTTAA AAAAAGATTT GGCCTCCAAA TCAGTCTTAG ACCAATCCAA AGAAGCCCTA
GTGCGTCAAC AATACGTGGT GGTGGGTGCA AAGCTATCGG TTCAAGAGCA TAAGGTGAAG
GTATCGCAGT TGCAAGCAAG GCTGCAAAAG TCACAGGCGA ATTTTGAACA AGCGAAGATT
AATTTGGAGC GCGGGCGTGT CATTGCGCCT TATGATGGGC GTATTGCTCA AGTATCGGTG
GCGCAGGGAA ATCGTGTCAA TGTGGGGGCT AAGCTGCTGA GTTATTACGC ATTAGACAGT
TTGGAGCTGC GCGCTAAGAT TCCGACGCAG CAGTTGAAAA CCGTGTATGA AGGCATGCAA
AGTGGCGACA CATTATACGC TCAGCTGGAA ATGAATAATC AACAATTTGA GCTGCCGCTG
AAGCGATTGG CAGGCGAAGC TGAAACCAGT GGCGTGGATG CATTTTTTGC TTTGCCGGAT
GCGTTAAAAA TTCTTCGTCC TGGTGAACTG TTGCAAGTAG ATTTTTACGG TGAACGTTTA
ACCAATGTCT TTGCAGTGCC TTATTCGGCG TTATATGGTG CAGACCGTAT TTATGTGGTC
GAGAAGGGGT TATTGCACAT CAAACATGTT AAGAATCTGG GGGAAACCCG TATTGACGGT
CAGTCGATGG TTCTTTTGCG AGGCGATGTT GCAGAAGGCG CTCAAGTGAT GACCACACAC
TTACCAAATG CAATCAGTGG GCTAAAAGTG TCGGTAATGG AGTAG
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| Protein sequence | MALTGLKNRL KPAMVPLLIL VGVVGIFIFF KATKPTQPPV QIQQKVWPIQ VMSVQKQSLS
RVQTLYGKVE SFRLVDVSSP VAGVVSELPV KAGDNFEKGM KLVALADSDL ELPFQIAKAD
VADTQAQLNL EKLAYDANQK RLEFEKKVLA LKERDVERNT QLLKKDLASK SVLDQSKEAL
VRQQYVVVGA KLSVQEHKVK VSQLQARLQK SQANFEQAKI NLERGRVIAP YDGRIAQVSV
AQGNRVNVGA KLLSYYALDS LELRAKIPTQ QLKTVYEGMQ SGDTLYAQLE MNNQQFELPL
KRLAGEAETS GVDAFFALPD ALKILRPGEL LQVDFYGERL TNVFAVPYSA LYGADRIYVV
EKGLLHIKHV KNLGETRIDG QSMVLLRGDV AEGAQVMTTH LPNAISGLKV SVME
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