Gene Tcr_0014 details

Gene Information

• Locus tag: Tcr_0014
• ID: 3760379
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Thiomicrospira crunogena XCL-2
• Kingdom: Bacteria
• Replicon accession: NC_007520
• Strand: -
• Start bp: 17520
• End bp: 19403
• Gene Length: 1884 bp
• Protein Length: 627 aa
• Translation table: 11
• GC content: 43%
• IMG OID: 637784720
• Product: hypothetical protein
• Protein accession: YP_390285
• Protein GI: 78484360
• COG category: [S] Function unknown
• COG ID: [COG1808] Predicted membrane protein
• TIGRFAM ID: [TIGR00271] uncharacterized hydrophobic domain; [TIGR00341] conserved hypothetical protein TIGR00341

Plasmid Coverage information

• Num covering plasmid clones: 4
• Plasmid unclonability p-value: 0.000000906355
• Plasmid hitchhiking: Yes
• Plasmid clonability: hitchhiker

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

GTGACAAAAA AATACCTGGT TTTATATGAC GCTAAAATCA ATTCAAATGC GTTTGAACAA 
GAGATTAAAC CACTATTGCC GGACTCGTGT GAATGGGTCG CTTACCATGG CCAATCGTTG 
GACAGTTTAT CTCCTTCAAA CCCGGTACTC ACTTGGTTAG GAGATGAAGA CTTATGCCAA 
ATATTGCCCA TTGCATCGGC TGAAAAATGG CAGATTGGAT TCATTCCGCA TCCGGAAATG 
GTTCGTGCTT ATCGTGCATT CTTTATTCCA CAAAAGCCGT CCGATGCGAT AGATGATATT 
TTGGCGGCAA CGGACGCTAC GCCAGCTGAT TTAATGTTAT GCAACCATGA AGTGGTTCTC 
GGCACGGTCA TGATTGGGAA TCCGGATATT ATGAAACCCG CAGCGTTGGT TGATGAAAGC 
ATATGGTGTA AATTTAAGAA CCTAATGTTG TTAACCTTTA ATTTAAAAAA GACCTGTTTA 
CTGCCATATC AATTTTTGAC CAAAAAAGAA AACCAGGTGA ATACGGCGGC TTTAGGCATT 
ACGATTGTGT ATCGCCCTGG TAACAGTGAG TTTACGAAAA GAGTGGTTGG GGAAACCGAA 
AAAGATGAAG CGACTTTGAA TGCGGTGATT TTAGCGCCTC GGAGTATTTC AGAAGTGCTG 
CATTTTTTGT TAACGCGCGT TTTACCGAAA AAAGTATTCG CTAAAGGTAC TTTGCCAAAT 
TATTTAGGGC ATATAAAAAC AGAAAGTGTG AAGGTCAGCG GGAATGACTT GGTGGATTTC 
AGTATTGATG GGGTGGCACA CAATGCTGAA AGTGTTAATG TTTCTGTAGA AAATGATGCG 
TTACAAGTAC TCAGTAAAAC CATGCCTGAA AAGGTCAGTA GTCAGGATCA GAAAGAATCG 
GCTCGCGTGG ATCGACTGCC GAAAGGTCAG GTGGTTAAAG AATTGGTGAC GCAGCATTTA 
CCATTGATTC ACCATGCTGA CCAAGAAGAA GTCAAAGAAG TTTTCATGAC CTTGAGGGAA 
AACGCTCAAG CATCAGAAGC GTATTTGGTT TTGATGGTAC TGGCGATTTT ATTGGCGACT 
GTTGGGCTGT TTGCCAATTC TTCTCCTGTG ATCATCGGGG CAATGATTTT AGCGCCTTTA 
ATGTCTCCGA TTGTTTCCCT TTCAATGGGG GTGTTAAGGC AAAACGGGGA CCTGGTGACC 
ACCAGTGCGA AAACCCTTTT CATCGGCATT ATCTTATCGT TATGTTTCGG GACGTTACTG 
ACATTGTTAA CCCCATTATA TACGGTGAAT TCTGAAATCA GTGCTCGATT AAGTCCAACC 
ATATTAGATT TAGGTGTCGC CATTATTTCT GGTATTGCCG CGGCGTATGC CAGCGCGAGA 
TCGGAAGTTG CAAAAAGTTT GGCTGGAGTG GCTATCGCGG TGGCTTTAGT TCCTCCACTC 
GGGGTATCTG CCATTGGGAT TGGTTGGTGG GATTGGAATG TGTTCTCGGG CGCTTTTTTA 
CTGTTTATGA CGAACTTGGT TGGAATTGTT TTAGCGGCGG CCGCTACCTT TTTGGTGATG 
GGGTTCAGTC CATTTCATTT GGCTAAGAAA GGACTGGTTT TATCGCTCAC GTTTGTGGTG 
ATCATCAGTA TTCCTTTAGG GTTCGCGTTT AAGAGTTTGG TGACGGAACA ACGTGCAGCC 
ATGGCGTTGA AAGATCTGAC CATTGAAGGC GTCGTCTTGA AAGATGTGAG CATTCGAAAT 
GATGATCCGA TTTATGTGTC GGTTAAGCTA TTATCGGAAC ATGGATTGAA AAGCGATCAA 
ATCAACGCGG TGAAAAGTCA AATAGAGACT CGGTTAGGAG AGTCGATTCA GTTAGAAGCC 
ACCACTGCGA TTTTAAAGAA ATAG 

 

Protein sequence

MTKKYLVLYD AKINSNAFEQ EIKPLLPDSC EWVAYHGQSL DSLSPSNPVL TWLGDEDLCQ 
ILPIASAEKW QIGFIPHPEM VRAYRAFFIP QKPSDAIDDI LAATDATPAD LMLCNHEVVL 
GTVMIGNPDI MKPAALVDES IWCKFKNLML LTFNLKKTCL LPYQFLTKKE NQVNTAALGI 
TIVYRPGNSE FTKRVVGETE KDEATLNAVI LAPRSISEVL HFLLTRVLPK KVFAKGTLPN 
YLGHIKTESV KVSGNDLVDF SIDGVAHNAE SVNVSVENDA LQVLSKTMPE KVSSQDQKES 
ARVDRLPKGQ VVKELVTQHL PLIHHADQEE VKEVFMTLRE NAQASEAYLV LMVLAILLAT 
VGLFANSSPV IIGAMILAPL MSPIVSLSMG VLRQNGDLVT TSAKTLFIGI ILSLCFGTLL 
TLLTPLYTVN SEISARLSPT ILDLGVAIIS GIAAAYASAR SEVAKSLAGV AIAVALVPPL 
GVSAIGIGWW DWNVFSGAFL LFMTNLVGIV LAAAATFLVM GFSPFHLAKK GLVLSLTFVV 
IISIPLGFAF KSLVTEQRAA MALKDLTIEG VVLKDVSIRN DDPIYVSVKL LSEHGLKSDQ 
INAVKSQIET RLGESIQLEA TTAILKK