Gene Dde_3580 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDde_3580 
Symbol 
ID3758566 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDesulfovibrio desulfuricans subsp. desulfuricans str. G20 
KingdomBacteria 
Replicon accessionNC_007519 
Strand
Start bp3539285 
End bp3540919 
Gene Length1635 bp 
Protein Length544 aa 
Translation table11 
GC content58% 
IMG OID637784501 
Productpeptidoglycan-binding LysM 
Protein accessionYP_390068 
Protein GI78358619 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG1388] FOG: LysM repeat 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones28 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCATATAT TCTCACGCGG TTTTGCTCCG GGCCGCGCCG GCGTGCTGGC ACTGCTTGTG 
CTCATGCTCG CGGGTGGCGG CTGCGTGTCC AAAAATTCTC CGCAACCCGA ACTGCCCCCC
GTAGCCGAAG TGCAGGCCTG CCCCGCACCG CTGCAAGAGC AGGATGCTTC CATCAGCGAT
GCCGAAGAAG TGGTTGAAAT TGAAGTGCCG CCGGCAGACG ACAATCAGCC TCTGACCGTG
GAAGAAGAGC AGGCTCTGCT GACCCAGCTG GATATTGATA TTGAAATGGA CGAAAGCGAC
CGCAGCGTGG TCGAGTCGTA CATCAAATAT TTCACCCACC GTGCCCGCGG TTCGTTTGAG
CGCTACCTCG AACGCGCCGA AGTGTATCTG CCCGCCGCAA GAGAAGTCTT CCGGCAGAAG
GGGCTGCCTG AAGAACTGGT CTATCTTGCA TTTGTGGAAA GCGGCTTCAA CCCCAACGCG
TACTCGCGGG CCGGTGCCGC CGGTGTGTGG CAGTTTATGC CTTTCACCGG CCGCAAATAC
GGGCTGCGGT ACGACTGGTG GATTGATGAA CGGCGCGATC CTTATAAGTC GGCAGAGGCT
GCGGCCAACT ACCTGTCGTG GCTTTATGCA GAATTCGGCG ACTGGTATCT GGCTCTTGCC
GCGTATAATG CAGGTGAGGG CAAGATAGGC AGAGCCATAG CAGGCACCGG TGCCGAGAGC
TTTTTTGAAC TTACAAGCCA GAATCATAAA CTGAGCCACC GTAAGCAGCT TCGCCGTGAG
ACGCGTCACT ATGTGCCTAA GTTCATAGCC ATAGTGAAGA TCATGCGTAA CCTTGAAGAG
CTTGGTTTCA AACCGCTGCG GCTTGATTGC GCTCCCGAGC TGAATCCGCT GCAGGTAAAG
GGTGGCACCG ATTTGCTGGC ACTGGCCGAT GCCGCCGGAA TGAAATGGGA CGACTTTAAG
AAATACAACA CCGCGTTTCT GCGGTATGTC ACGCCTCCCG ATGCTGAGAC CACTGTATAT
GTGACTCCCG CGGCAAAGTC CGGTGCTCTG GCGTTTCTGG CAAAGCCGGA ATCACGCCCG
TATGCCGGAT GGGCCGATTA CAAGGTGCGC AGCGGTGACT CATGGTATCG TATCAGCCGC
AGATACGGGG TGCCTGTGTC TGTGCTGAAA AAGGTCAACC AGAAGAAAAG CAATCTGCTG
CGTCCGGGTG AGCGGCTCAT GATTCCGCGT ACCGGCAGTG GCAGAATTCC TTCTTCGCCC
ATGCAGGAGA CCAGAGCACT GGCGCAGAAG CGCGGTGACT ACGTGGTGAG TCAGGGCGAC
ACCCTGTACG ATATAGCCCG CAACTACGGG CTGACAGTGG CCACGCTGAA GCAGGCCAAC
GGTCTGCGCA GCAGCATGCT GCGTCCCGGA CAGAAGCTGT ACATTCCCGG ACAGACCAGA
GCGCAGGAAG CCCGTACCCG CAAGGACGCG GAACAGGCGC GCAAGGCCGT TGTGTACAGA
GTGCGTACCG GTGATTCGCT ATGGGCCATC GCCCAGCGGT TCAATGTCTC ATATAATGAA
CTGATGCGCT GGAACAACCT CGGCCGCAGA AGCATCATCC GCCCCGGCGA CAAACTGACT
CTGTATGTGG ACTGA
 
Protein sequence
MHIFSRGFAP GRAGVLALLV LMLAGGGCVS KNSPQPELPP VAEVQACPAP LQEQDASISD 
AEEVVEIEVP PADDNQPLTV EEEQALLTQL DIDIEMDESD RSVVESYIKY FTHRARGSFE
RYLERAEVYL PAAREVFRQK GLPEELVYLA FVESGFNPNA YSRAGAAGVW QFMPFTGRKY
GLRYDWWIDE RRDPYKSAEA AANYLSWLYA EFGDWYLALA AYNAGEGKIG RAIAGTGAES
FFELTSQNHK LSHRKQLRRE TRHYVPKFIA IVKIMRNLEE LGFKPLRLDC APELNPLQVK
GGTDLLALAD AAGMKWDDFK KYNTAFLRYV TPPDAETTVY VTPAAKSGAL AFLAKPESRP
YAGWADYKVR SGDSWYRISR RYGVPVSVLK KVNQKKSNLL RPGERLMIPR TGSGRIPSSP
MQETRALAQK RGDYVVSQGD TLYDIARNYG LTVATLKQAN GLRSSMLRPG QKLYIPGQTR
AQEARTRKDA EQARKAVVYR VRTGDSLWAI AQRFNVSYNE LMRWNNLGRR SIIRPGDKLT
LYVD