| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dde_3580 |
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| Symbol | |
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| ID | 3758566 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfovibrio desulfuricans subsp. desulfuricans str. G20 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007519 |
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| Strand | - |
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| Start bp | 3539285 |
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| End bp | 3540919 |
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| Gene Length | 1635 bp |
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| Protein Length | 544 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 637784501 |
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| Product | peptidoglycan-binding LysM |
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| Protein accession | YP_390068 |
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| Protein GI | 78358619 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG1388] FOG: LysM repeat |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 28 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCATATAT TCTCACGCGG TTTTGCTCCG GGCCGCGCCG GCGTGCTGGC ACTGCTTGTG
CTCATGCTCG CGGGTGGCGG CTGCGTGTCC AAAAATTCTC CGCAACCCGA ACTGCCCCCC
GTAGCCGAAG TGCAGGCCTG CCCCGCACCG CTGCAAGAGC AGGATGCTTC CATCAGCGAT
GCCGAAGAAG TGGTTGAAAT TGAAGTGCCG CCGGCAGACG ACAATCAGCC TCTGACCGTG
GAAGAAGAGC AGGCTCTGCT GACCCAGCTG GATATTGATA TTGAAATGGA CGAAAGCGAC
CGCAGCGTGG TCGAGTCGTA CATCAAATAT TTCACCCACC GTGCCCGCGG TTCGTTTGAG
CGCTACCTCG AACGCGCCGA AGTGTATCTG CCCGCCGCAA GAGAAGTCTT CCGGCAGAAG
GGGCTGCCTG AAGAACTGGT CTATCTTGCA TTTGTGGAAA GCGGCTTCAA CCCCAACGCG
TACTCGCGGG CCGGTGCCGC CGGTGTGTGG CAGTTTATGC CTTTCACCGG CCGCAAATAC
GGGCTGCGGT ACGACTGGTG GATTGATGAA CGGCGCGATC CTTATAAGTC GGCAGAGGCT
GCGGCCAACT ACCTGTCGTG GCTTTATGCA GAATTCGGCG ACTGGTATCT GGCTCTTGCC
GCGTATAATG CAGGTGAGGG CAAGATAGGC AGAGCCATAG CAGGCACCGG TGCCGAGAGC
TTTTTTGAAC TTACAAGCCA GAATCATAAA CTGAGCCACC GTAAGCAGCT TCGCCGTGAG
ACGCGTCACT ATGTGCCTAA GTTCATAGCC ATAGTGAAGA TCATGCGTAA CCTTGAAGAG
CTTGGTTTCA AACCGCTGCG GCTTGATTGC GCTCCCGAGC TGAATCCGCT GCAGGTAAAG
GGTGGCACCG ATTTGCTGGC ACTGGCCGAT GCCGCCGGAA TGAAATGGGA CGACTTTAAG
AAATACAACA CCGCGTTTCT GCGGTATGTC ACGCCTCCCG ATGCTGAGAC CACTGTATAT
GTGACTCCCG CGGCAAAGTC CGGTGCTCTG GCGTTTCTGG CAAAGCCGGA ATCACGCCCG
TATGCCGGAT GGGCCGATTA CAAGGTGCGC AGCGGTGACT CATGGTATCG TATCAGCCGC
AGATACGGGG TGCCTGTGTC TGTGCTGAAA AAGGTCAACC AGAAGAAAAG CAATCTGCTG
CGTCCGGGTG AGCGGCTCAT GATTCCGCGT ACCGGCAGTG GCAGAATTCC TTCTTCGCCC
ATGCAGGAGA CCAGAGCACT GGCGCAGAAG CGCGGTGACT ACGTGGTGAG TCAGGGCGAC
ACCCTGTACG ATATAGCCCG CAACTACGGG CTGACAGTGG CCACGCTGAA GCAGGCCAAC
GGTCTGCGCA GCAGCATGCT GCGTCCCGGA CAGAAGCTGT ACATTCCCGG ACAGACCAGA
GCGCAGGAAG CCCGTACCCG CAAGGACGCG GAACAGGCGC GCAAGGCCGT TGTGTACAGA
GTGCGTACCG GTGATTCGCT ATGGGCCATC GCCCAGCGGT TCAATGTCTC ATATAATGAA
CTGATGCGCT GGAACAACCT CGGCCGCAGA AGCATCATCC GCCCCGGCGA CAAACTGACT
CTGTATGTGG ACTGA
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| Protein sequence | MHIFSRGFAP GRAGVLALLV LMLAGGGCVS KNSPQPELPP VAEVQACPAP LQEQDASISD
AEEVVEIEVP PADDNQPLTV EEEQALLTQL DIDIEMDESD RSVVESYIKY FTHRARGSFE
RYLERAEVYL PAAREVFRQK GLPEELVYLA FVESGFNPNA YSRAGAAGVW QFMPFTGRKY
GLRYDWWIDE RRDPYKSAEA AANYLSWLYA EFGDWYLALA AYNAGEGKIG RAIAGTGAES
FFELTSQNHK LSHRKQLRRE TRHYVPKFIA IVKIMRNLEE LGFKPLRLDC APELNPLQVK
GGTDLLALAD AAGMKWDDFK KYNTAFLRYV TPPDAETTVY VTPAAKSGAL AFLAKPESRP
YAGWADYKVR SGDSWYRISR RYGVPVSVLK KVNQKKSNLL RPGERLMIPR TGSGRIPSSP
MQETRALAQK RGDYVVSQGD TLYDIARNYG LTVATLKQAN GLRSSMLRPG QKLYIPGQTR
AQEARTRKDA EQARKAVVYR VRTGDSLWAI AQRFNVSYNE LMRWNNLGRR SIIRPGDKLT
LYVD
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