| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dde_3478 |
|---|
| Symbol | trpA |
|---|
| ID | 3758456 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfovibrio desulfuricans subsp. desulfuricans str. G20 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007519 |
|---|
| Strand | - |
|---|
| Start bp | 3438923 |
|---|
| End bp | 3439735 |
|---|
| Gene Length | 813 bp |
|---|
| Protein Length | 270 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 637784391 |
|---|
| Product | tryptophan synthase subunit alpha |
|---|
| Protein accession | YP_389966 |
|---|
| Protein GI | 78358517 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0159] Tryptophan synthase alpha chain |
|---|
| TIGRFAM ID | [TIGR00262] tryptophan synthase, alpha subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 0.899291 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCATACAG AACATATCAC AAGCCCCGCA GACAGGCTGA CCATGCGTAT CCGCGAGGCC
AACCGTCAGG GCCGCAAGGC TCTTATCCCG TTTCTTCCGG CAGGGTTTCC CGATTCCGGG
GATTTCTGGC GGCAGCTGGA CGAGCTGGAC GCGGGCGGTG CCGATGTACT TGAAATAGGC
ATTCCTTTTT CCGACCCGTG CGCCGACGGA CCGGTGGTGG AGCAGGCTTC GCTGGAAAGT
CTGGCCCGCG GAACCACCCT GCGCGGCGTG CTTGAAGAGC TTGAACGGCG CAAGGGACGC
TATCGTGCAG GTATTGTGCT GATGGGGTAC CTTAATCCGT TTCTGCAGTA CGGGCTGGAT
GCGCTGGCGC GCGATGCCGC CCGTGCCGGG GTTGAAGGGT TCATCATTCC CGACCTGCCG
CTAGAAGAGG ATGCCCTGTG CCGCGGGGCG CTTGCGGCTG AGGGGCTGGC GCTGATTCCG
CTGGTGGCAT CCAATACCGA TGAAGACCGT ATGCGTGCCT ATGCCGGAGT GGCGCAGGGC
TATGTCTATG TGGTTTCGGT TATGGGTACC ACCGGTGCCC GTACCGACCT GCCTGCGGGG
GTTACCGCCA CGCTGGAACG CGCCCGCCGG TGCTTTGACC TGCCGCTGGC GCTGGGGTTC
GGCGTCCGTG AACCGGAACA GCTGGCAGCC TGCGGCGACA GACTGGATGC TGTGATTTTC
GGCAGTGCGC TTATCAGCCA CATCCGCACA CAGGGCAGTG CTGCTTCATT TATGGAACGC
TGGCGCCGGC CTGTGGCAGA ACTGGTGCTC TGA
|
|---|
| Protein sequence | MHTEHITSPA DRLTMRIREA NRQGRKALIP FLPAGFPDSG DFWRQLDELD AGGADVLEIG
IPFSDPCADG PVVEQASLES LARGTTLRGV LEELERRKGR YRAGIVLMGY LNPFLQYGLD
ALARDAARAG VEGFIIPDLP LEEDALCRGA LAAEGLALIP LVASNTDEDR MRAYAGVAQG
YVYVVSVMGT TGARTDLPAG VTATLERARR CFDLPLALGF GVREPEQLAA CGDRLDAVIF
GSALISHIRT QGSAASFMER WRRPVAELVL
|
|---|
| |