Gene Dde_1088 details

Gene Information

• Locus tag: Dde_1088
• Symbol: smpB
• ID: 3755437
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Desulfovibrio desulfuricans subsp. desulfuricans str. G20
• Kingdom: Bacteria
• Replicon accession: NC_007519
• Strand: -
• Start bp: 1118952
• End bp: 1119419
• Gene Length: 468 bp
• Protein Length: 155 aa
• Translation table: 11
• GC content: 53%
• IMG OID: 637781958
• Product: SsrA-binding protein
• Protein accession: YP_387584
• Protein GI: 78356135
• COG category: [O] Posttranslational modification, protein turnover, chaperones
• COG ID: [COG0691] tmRNA-binding protein
• TIGRFAM ID: [TIGR00086] SsrA-binding protein

Plasmid Coverage information

• Num covering plasmid clones: 24
• Plasmid unclonability p-value: 0.469803
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGACGAAAA AAAAATCATC GGGCGGCGCT CTCATTGCCC AGAATAAAAA AGCGCGCCAT 
CTTTACGAGC TGCTCGAATT TTTCGAGGCA GGCATTGCGC TGGCAGGCAC GGAAGTTAAA 
AGCCTTCGTG CCGGACAGGT TTCGTTCACT GACAGTTATG TCACCATTCA CAACAACGAG 
GCGTGGATAG TGGGCATGCA CATAGCGCCC TACGCCAATG CGGGCTATGT GCAGCATGAC 
CCCGACCGTG ACCGCAAACT GCTGCTGCAC GCGCGCGAAA TAGACACGCT GCGCGCCCGT 
GTGGAACAAA AAGGCCTGAC AGTGGTACCC GTGAAGCTGT ATTTTAAAAA TTCACGCGTA 
AAGCTGGAAA TTGCCGTGGG ACGCGGCAAA AAGCTGCACG ACAAACGTCA GGACATCAAA 
CAGCGTGACG TGGAACGCGA AACCCGCAGA GAAATCATGC GTCATTGA 

 

Protein sequence

MTKKKSSGGA LIAQNKKARH LYELLEFFEA GIALAGTEVK SLRAGQVSFT DSYVTIHNNE 
AWIVGMHIAP YANAGYVQHD PDRDRKLLLH AREIDTLRAR VEQKGLTVVP VKLYFKNSRV 
KLEIAVGRGK KLHDKRQDIK QRDVERETRR EIMRH