Gene Dde_0965 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDde_0965 
Symbol 
ID3755576 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDesulfovibrio desulfuricans subsp. desulfuricans str. G20 
KingdomBacteria 
Replicon accessionNC_007519 
Strand
Start bp989144 
End bp992218 
Gene Length3075 bp 
Protein Length1024 aa 
Translation table11 
GC content54% 
IMG OID637781832 
ProductAcrB/AcrD/AcrF family protein 
Protein accessionYP_387461 
Protein GI78356012 
COG category[V] Defense mechanisms 
COG ID[COG0841] Cation/multidrug efflux pump 
TIGRFAM ID[TIGR00914] heavy metal efflux pump (cobalt-zinc-cadmium) 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00708155 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAATTAC CGGAGATATC CGTCCGCAGG CCGGTCACGA CCGTTATGGT TTTCGCTGCC 
ATTACATTGC TGGGTTGCGT GGCTTTTTTC AGGCTCAACC TCGACTTGTT GCCGGATATT
GAACCTCCGG CCGTGAGTGT CATCACACCC TATCCGGGGG CTTCCGCCAC GGATGTTGAG
TCGGAGGTGA CCAAGTACCT GGAAGACCAG CTTTCCACCA CACCGAATCT CGACCGGCTG
GAGTCAAAGT CCAAAGACAA CATCGCCATC GTCAATTGCA TATTCAACTG GGGCACCGAC
CTGGATGTTG CGGTCAACGA TATCCGGGAG AAGATCGATC TTGCCAAGCC GGACCTTGCC
GATGGAGCGG AAGACCCCTT TATCTTCAAG TTCAGCAGTT CCATGGTGCC GGTGCTCATC
ATGACGGTGA CGGCGGAAGA AAGCAGTCCC GATCTTTACA GAATTGTGGA CAAGCAGATC
GCCGATCCGT TGAAGCGTGT GCCCGGCGTG GGCGCTGTCG TCTATATCGG CGGTCAGGAA
AGACAGATCA ATGTGCATTT CGACCGCGAA GCAATAGATG CTTATCACAT TTCCGTCCAG
CAGATCAGAA ATGTTCTCGC CGCTGAAAAC CTGAACCTTC CGGTGGGCAC CGTCAAGATC
GGGAGGAATG AACTCCAGAT CAGAGTGGCG GGGCGCTATC GGGATGCAGC GGAAATCGCA
AATACGGTGA TCGGAAGCAA CGGCGACGCG CTTGTGCGGC TCAGAGACGT GGCCACGGTC
ACCGATGCCT TTGAGGAGCC GCAGGAGTGG GCGCGTTCCG GCAAGCTTCC TGCGATTGCC
TTGATTATTC AGAAGCAGTC CGGGACCAAC ACCGTCAACG TGATCGAAGC CATAAAAGAT
CGCCTCAAGA CACTGAAGAC CGAAGTGCCG GCGGATATCG AAATCCACGG GATTCTGGAT
AACTCAGATC ACATTTATGC GATGATCAAT AGTTTGACCG AAGCCGCCGT CGTCGGAGGC
CTTTTGGTCA TTGTCGTCTG TTTCCTGTTT CTCCGGCGGT TTCGCACCAG CCTGGTCGTC
TCAATGGCAA TTCCTTTTTC GATTATCGTC GCCTTTATCG GCCTCTTCGT CATGGATTAT
ACCATCAACG TCATTTCCAT GATGAGTCTT GCCATTGCTG TGGGAATGGT GGTGGACGAT
GCCATCGTCG TACTTGAAAA CATCGTGCGG CATGTGGACG ATGGCAAGCC TCCGCAGTTG
GCCGCCGTGG AGGGAACATC CGAAGTGGGT ATGGCGGTAG CCGCGTCAAC ATTGACCATT
GTAGCTGTCT TCGCCCCTCT TCTCTTAGTG AAAGGGATCG CCGGCATCAT CTTTGGTCAG
TTGGCGTTCA TGATCTTGAT TACGATTCTG GCCTCGCTTT TCATTTCATT GACGTTGACC
CCCATGGCTG CTTCCCGTTT GCTCCGTTCA CGGGATCAAA GAAAGCTCAA TCCGGTATTT
GTATGGAGCG AGCGTTTGCT GAATGGAATC GAAGCCGGTT ATTCTCACGT CCTGGGATGG
GGACTAAGGC ACCGTAACAT TTTGCTTTCA CTTATAGTTA TTGTATTTAT CGGCAGTCTG
GCACTGATTC CTTTGGTCGG TACGGAATTT TTCCCCGAAG TGGATTCGGG GGAAGTGGAG
GTGGTCCTGG AGATGGCGCA GGGCACCCGA GTGGAGGTCA CGGCCGGAAC CACGGAAGAA
ATGCTCAACG CGGTGAACGC CATTCCGGAA ATGGAAGCCT CCTATGCCCT GGCAGGTCAG
ACCAAGAAAG GATTTTTAAC AGCCCTCGGT TTTGAAGAGG GAACCGGCAT CGGTCGCATC
GGAGGGCGTC TCATTGATAA AAAAGAACGG AGTCGCCATG CCAAGGAGGT CGCTTCGGAG
CTTCGTGAGC AGGTCATAAA ACTGCCGGGC GTTGAGAATT TTTCCGCCAG CGCCGTAAGC
GTCATCCAAA AGGCGTTCCT GGGAGGCGGC CGGCCTATCA GCATCGATAT TCTGGGCCAT
GATATCGAGA CGACCGACAA AGCCGCCGCA AAGATCCAGC GCATCGTGGA AACCACACCC
GGCGCAGTGG ATGTCTCTGT CAGCAGAAAG AGACCACGGC CGGAAGTGCG GATTTGTCTT
GACCGGGATA AGGCGGCATC CCTGGGATTG AATGTGGCGC TTGTCGCCGA CGCATTGAGG
ACCAACTACT ATGGATTCGA TGATACGAAG TTCCGGGAGG CGGGTGACGA CTTCGACATC
GAGTTGCGAC TGAAAAAAGA CCAGCGGGAA ACGATTCGTG AAATCGGGGA AACCCCCATC
ACCACCCTGA CCGGTCAGAC CATTAAGCTC CGGAACGTCG CGTCTGTTCG GGAAACCTTT
GGGCCCGTGG AGATCGACCG GAAAAACAGG ACCCGCGTCA CAAAGGTTCA GGCGGGCGTC
CAGGGCAGGG TTCTGGGGGA TGTGGTACGG GATGTTCGAG AAAAGATGGC CTCTCTTGAC
CTGCCTCCCG GCGTTTCCAT CGAATGGGGC GGGGAGGTGG AGGAACAGCG AAAAGCGTTC
CGCGACCTGA CCCTCCTTTT GATTCTGGGA ATAGTCCTTG TCTACATGGT CATGGCAGGG
GAGTTCGAGG ATTTCGTTGA TCCATTCATC ATCATGTTTT CGGTTCCTTT CGCCTTCGCC
GGAGTGATAT GGGCCTTCGT TGCCACGGCC ACTCCGCTCA ACCTGATGAG CTTCATCGGG
GTAATCATGC TCATGGGCAT TGTTGTAAAG AACGCCATTG TGCTCGTGGA TTATACCAAG
CAACTGAGAG CAGGTGGGAT GACGCTAAAC GAAGCGGTGG TCACGGGCGG AAAAACACGC
CTGAGGCCGG TGCTCATGAC GAGTTTGACC ACCATATTCG GCATGGTCCC ATTAGCCCTT
TCCAGAGGGG AAGGCTCTGA AATATGGAAT GCACTGGGCA TCACGGTCAT TGGGGGACTG
TCGGTCAGCG GCCTTGTGAC ATTGATTCTG GTGCCGCTAA TGTATTCGCT GGTTCACCGG
GGTAAAGCAA AATGA
 
Protein sequence
MKLPEISVRR PVTTVMVFAA ITLLGCVAFF RLNLDLLPDI EPPAVSVITP YPGASATDVE 
SEVTKYLEDQ LSTTPNLDRL ESKSKDNIAI VNCIFNWGTD LDVAVNDIRE KIDLAKPDLA
DGAEDPFIFK FSSSMVPVLI MTVTAEESSP DLYRIVDKQI ADPLKRVPGV GAVVYIGGQE
RQINVHFDRE AIDAYHISVQ QIRNVLAAEN LNLPVGTVKI GRNELQIRVA GRYRDAAEIA
NTVIGSNGDA LVRLRDVATV TDAFEEPQEW ARSGKLPAIA LIIQKQSGTN TVNVIEAIKD
RLKTLKTEVP ADIEIHGILD NSDHIYAMIN SLTEAAVVGG LLVIVVCFLF LRRFRTSLVV
SMAIPFSIIV AFIGLFVMDY TINVISMMSL AIAVGMVVDD AIVVLENIVR HVDDGKPPQL
AAVEGTSEVG MAVAASTLTI VAVFAPLLLV KGIAGIIFGQ LAFMILITIL ASLFISLTLT
PMAASRLLRS RDQRKLNPVF VWSERLLNGI EAGYSHVLGW GLRHRNILLS LIVIVFIGSL
ALIPLVGTEF FPEVDSGEVE VVLEMAQGTR VEVTAGTTEE MLNAVNAIPE MEASYALAGQ
TKKGFLTALG FEEGTGIGRI GGRLIDKKER SRHAKEVASE LREQVIKLPG VENFSASAVS
VIQKAFLGGG RPISIDILGH DIETTDKAAA KIQRIVETTP GAVDVSVSRK RPRPEVRICL
DRDKAASLGL NVALVADALR TNYYGFDDTK FREAGDDFDI ELRLKKDQRE TIREIGETPI
TTLTGQTIKL RNVASVRETF GPVEIDRKNR TRVTKVQAGV QGRVLGDVVR DVREKMASLD
LPPGVSIEWG GEVEEQRKAF RDLTLLLILG IVLVYMVMAG EFEDFVDPFI IMFSVPFAFA
GVIWAFVATA TPLNLMSFIG VIMLMGIVVK NAIVLVDYTK QLRAGGMTLN EAVVTGGKTR
LRPVLMTSLT TIFGMVPLAL SRGEGSEIWN ALGITVIGGL SVSGLVTLIL VPLMYSLVHR
GKAK