| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dde_0962 |
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| Symbol | |
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| ID | 3755573 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfovibrio desulfuricans subsp. desulfuricans str. G20 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007519 |
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| Strand | + |
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| Start bp | 986452 |
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| End bp | 987669 |
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| Gene Length | 1218 bp |
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| Protein Length | 405 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 637781829 |
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| Product | secretion protein HlyD |
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| Protein accession | YP_387458 |
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| Protein GI | 78356009 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1566] Multidrug resistance efflux pump |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 0.255558 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGACGAA GAGGAGTCTA TATATCCATT GCTATTGCGG CTGCTGTTAT TGCGTTCTTG
GCTGTCCAAG TTTCCAGGAA GCAATGGCAA AAAGATGAAG ATCCGAACGC GGCGGGCAAG
GCGTTGCCTG TCACAATCGC ATCTGTTGTC CCGCACGAAT TCGCTGATGA AATCAGCGCC
GTCGGCACCT TGAAAGCCCG AGACACGAGT CCGCTAAGCC CCAAGGTGGC AGGAACGGTG
AGCCGGGTTC TGGTTGATAT CGGTGAGCGC GTCAATGCCG GTGAGGTCGT TATAAAACTG
GACAGAACAA ACTATGATCT CGGCGTCAAG CAGGCCCGGG CGGCGCTAGC AGCTGCGGAA
GCAGCAGTTC CGCAGGCTGA AGCCCATTTT GAACAGGCCG AGAAAGAATA CCGACGCGCA
ATCGAACTGC TGAAGGAAAA AGTGATTCCG CAAAGTCGCT TTGATGCATC AGAAGCGGCC
TTTAAAAGCG CCAAGGAAGC GGTGTTCTAC GCCCGAGCAC AGAGGGACCA GGCAAAGGCC
GCCTTGGAGA CAGCGCTGGA ACATCTCAAG GATGCAGATA TCCGATCGCC TATCGGCGGC
GCTGTCGTGG AGAGAAATGT GGAAATCGGT CAGGCGGTCG CTCCCGGCGG CCGACTTCTG
CTAATCGTGG ACCAAACATC TCTGAACCTG GATGTCGATT TGCCGGAAGC AGACATTGGC
CGGATTGTCG TTGGAACTGT TGCGCTGATC ACGACAGACG CCTTCCCGGG ACATGAGTAT
TCAGGGAAAG TAACCGTTAT CAATCCATTG GTGGACCGAA AGACGCGTAC TTTCCGCATG
AGAATCGAGG TGCCGAATCC GTCCGGGAAG TTGGTGGACG GAATGTATGC CAGGGTGAAG
CTTTCGGCAG AGAAAAGAAG GTCCCTTGCC GTTCCCCGTG AAACCTTGCA ACGCCTCCCC
GGCAGCGGCA CCTATTACGT TTTTGTGGTG GAAGGAAATA AGGCCCATAA GCGAACGGTC
GAAATTAGGG CCATGGATGA CCAATTTGCC GAAGTGATGG GCGGCTTGGT TGAGAATGAC
AAAGTGGTCA CCAGCGGAGC GGGACGTTTA CAGTCAGGCA TGGAGGTAAG CGTGCAAGAT
ATTTTGAACA AGAATGGGAC GGATAACTCT GGGGGACAAC TTTTCAAGAA GAACGGCGGT
GAACATGTCG GACGATAG
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| Protein sequence | MRRRGVYISI AIAAAVIAFL AVQVSRKQWQ KDEDPNAAGK ALPVTIASVV PHEFADEISA
VGTLKARDTS PLSPKVAGTV SRVLVDIGER VNAGEVVIKL DRTNYDLGVK QARAALAAAE
AAVPQAEAHF EQAEKEYRRA IELLKEKVIP QSRFDASEAA FKSAKEAVFY ARAQRDQAKA
ALETALEHLK DADIRSPIGG AVVERNVEIG QAVAPGGRLL LIVDQTSLNL DVDLPEADIG
RIVVGTVALI TTDAFPGHEY SGKVTVINPL VDRKTRTFRM RIEVPNPSGK LVDGMYARVK
LSAEKRRSLA VPRETLQRLP GSGTYYVFVV EGNKAHKRTV EIRAMDDQFA EVMGGLVEND
KVVTSGAGRL QSGMEVSVQD ILNKNGTDNS GGQLFKKNGG EHVGR
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