| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dde_0828 |
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| Symbol | |
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| ID | 3755706 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfovibrio desulfuricans subsp. desulfuricans str. G20 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007519 |
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| Strand | + |
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| Start bp | 851871 |
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| End bp | 854531 |
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| Gene Length | 2661 bp |
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| Protein Length | 886 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 637781693 |
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| Product | TPR repeat-containing protein |
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| Protein accession | YP_387324 |
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| Protein GI | 78355875 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3063] Tfp pilus assembly protein PilF |
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| TIGRFAM ID | [TIGR02917] putative PEP-CTERM system TPR-repeat lipoprotein |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCAGTTCT CTGTGGTTAT GCGTCTTCTT GCCGCTCTTG CTCTTGTTCT GTCTCTTCTT
GCTGCCGGTT GTTCCGGCGA AACCAGCGAA GATTTTCTGG CTGAAGGCCG CAAGCTCATG
GAGCAGGGCA ATTCGTCCGG CGCCATTGTC TTCTTTAAGA GTGCCCTTGA AAAAGAACCC
CAGCTGTACG AGGCCCGTCT GGCTCTCGGG CAGGCTTATG CGGCCGAAGG AAAGCTTGAT
CAGGCCGAAA CCGCCTTTCA GAAGTGTCTG CGGCAGAATG CATCCGATCC GGAACTGCGC
CTTGCCCTTG CCCGCCTGTA TACGCAGCTG CGCAAAAGCC GCGACACCAT CGAGCACGTG
AATGCGTATG AAGGGCTGAA AGGCCGCAGC GCTGAAACCG AAGAACTGAA AGGAATCGCG
CTTGCCATGG GCGGCAATGC CCCCGGGGCC GAAGATGCGT TGCGCTCGGC GCTGCAGCTG
GAACCCAGAA GAATTTCGTC CCGCCTTGCC CTTGCCCGCC TGTATGCTTC CACCGGCAGA
GTGGATGAGG CGCGCACCAT GGTGGGCGAG GCCCTTGCCA TCAGCCCTGC AGATCACGAT
TCGTTGCTGC TTGCCGCGGA ACTTACACGC TACAGCGGTG ATGATGCCGC CATAACTGCT
GCTTACCGGA CACTTTCCGA ACAGTACCCC GACGATAAAT ATGCCCGTTA CATGATCGGC
GCGCAGGAAA TGAAAACCGG TAATCTGGAT GCGGCCCGTC AGACGACGGC GGCCATGCGC
ACCCGGTTCG GTGATGATGC GCTGGTGCTC ATGCTGGAAG GCATGCTTGC CTATGCCGAC
AAGGATTACG AGGCGGCAGC CCGTGCTTTT CAACGCAGTG TATCGGCACG CCCCACGCTG
GACGCTTTTT TCCGTCTGGG GCTGGCGCAG GTCGGGCTGG GCGATCTGGA AACCGCGCTC
AGCCAGTTCC GCGTTGTGCT TGACAAACAG CCCCAGCACG CGGAGGCCCG CCGTATGGTG
GCCGCCACGC TGCTGCGCCA GAACAGAATT GAAGATGCAC AGGCAGAAGC CCGCCGTCTT
GTAGAGATGC ACCCCGACTA CCCGTGGGGA CATTTTCTGC TGGCCTCGGC CGCCATGGCA
AGGGGTGACA TGGAACTGGC CGCCAGAGAA CTGGATGTGG TCACCAGTCT TGCTCCCGCC
ATGGCCGAAG CTCATCTGCA GAAAAGCTAC ATCAATATCA GCAGCGGCCG GTTTGATCTT
GCAGAAAGTG ATCTGAACAG CGCTGTGAGC GCTTCTCCCG GCAACATACA GGCCCGGGTG
GCTCTTTTTC AGTTCAATAT GGGCCGGGGC CGCTTTGATG AGGCCGAAAA GGTGCTGACC
GAAGGCATGA ACGGCACGCC CAGAGATGCC GTGCTGTGGA ATTACATAGC CGGCATGTAC
CAGCTGCGCA GGGACGATGC CAAGGCGCTG GAGGCGCTGG AAAAAGCGCA GCAGGCCGAT
CCTGATCTGC GGGACAGTTA CATGACTGCC AGCCGTATCC GCGCTGCCGC AGGCGATGAA
GCCGGTGCGC TGGAGCAGCT GGAGCGCTAT CTGCAGCGGC ATCCGGACGA CGGCCGTTTT
CTGGTGGTTT CCGCCGTGCT GCTGGATCTG ACAGGAGATG CGCAAAAGGC CGGTGCACGT
CTGGACAGGG CGCGCGAGCT GGATGAACCC AGCGCTCTGC CCGCCACCGT CAGCCGTCTG
ATGAGCAGGG GCGAGACGGA TAAGGCCCGT CAGCTGCTGC AGGATGCGTA TGCCGCGTCC
GGCAGTCTGC GCGACCTTTC CATGCTTACG GGCTTTCTGA CAGGGCAGGG CCGGACGGAC
GAAGCGCTGG CCCTTTACGA AGCTTATGCC GCCAAGGATC CTGTGGCTGC TGCGCGCGGG
ATTTTTGCGG TGCATACACT CAAGCGTGAC TATCAGAAGG CGCTGGAACA GGCCCGCAAG
CTGAGCGATC TTGAGGCATC AAGCCCCGAG GGGGCACTGC AGGAGGCCGC CACCATGGAA
CGCATGGGCG ATCCTGCTGC GGCCCTTGCC CGGCTGGAAG AGGCCTACAG AAAATTTCAG
GCTCCGCAAC TGCTTATCGC CCAGGCATCG GTGGCAAGGC GCATGGATAA CATAGATAAA
GCCGAAGCCT ACATACGCAC CTGCCTTAAG GCCGCACCGG ATTTTGTACC GGCAAAGGTG
GCCGCAGCGG AGCTGGCACA CCAGCGCGGC CGGCTGGACG AAGCCGCAGC CGCCTATGAA
GAGATTCTGC AGCGTGTGCC GGATGACGCC GCAGTCATGA ATAATCTTGC CATGATCTAC
GTCCGTGACG AAGCAACCCT CAGAAGGGCG CTGCAGCTGG CGCTGACGGC ATATGTGCGT
CAGCCCGATT CGCCGCAGAT CATGGATACA CTGGGCCTGT GCCTGACCGC GGCGGGACGC
CCCGCCGAGG CTGTGCGCGT GCTCAGACGC GCCAGTGCGC TGCTGCCCGA TGATCAGTCC
ATCCGCTATC ATTACGCTCA GGCTCTTGCG GCCGCGGGCG AAAAGGGCGC AGCATTGAAA
GAAGTCAGCA CCGCTCTGCA GGGCAGCGAG TTTTCCGAGG CAGGGGAAGC CCGGAAGCTG
CTCAAAAAAC TGGGCGGGTA A
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| Protein sequence | MQFSVVMRLL AALALVLSLL AAGCSGETSE DFLAEGRKLM EQGNSSGAIV FFKSALEKEP
QLYEARLALG QAYAAEGKLD QAETAFQKCL RQNASDPELR LALARLYTQL RKSRDTIEHV
NAYEGLKGRS AETEELKGIA LAMGGNAPGA EDALRSALQL EPRRISSRLA LARLYASTGR
VDEARTMVGE ALAISPADHD SLLLAAELTR YSGDDAAITA AYRTLSEQYP DDKYARYMIG
AQEMKTGNLD AARQTTAAMR TRFGDDALVL MLEGMLAYAD KDYEAAARAF QRSVSARPTL
DAFFRLGLAQ VGLGDLETAL SQFRVVLDKQ PQHAEARRMV AATLLRQNRI EDAQAEARRL
VEMHPDYPWG HFLLASAAMA RGDMELAARE LDVVTSLAPA MAEAHLQKSY INISSGRFDL
AESDLNSAVS ASPGNIQARV ALFQFNMGRG RFDEAEKVLT EGMNGTPRDA VLWNYIAGMY
QLRRDDAKAL EALEKAQQAD PDLRDSYMTA SRIRAAAGDE AGALEQLERY LQRHPDDGRF
LVVSAVLLDL TGDAQKAGAR LDRARELDEP SALPATVSRL MSRGETDKAR QLLQDAYAAS
GSLRDLSMLT GFLTGQGRTD EALALYEAYA AKDPVAAARG IFAVHTLKRD YQKALEQARK
LSDLEASSPE GALQEAATME RMGDPAAALA RLEEAYRKFQ APQLLIAQAS VARRMDNIDK
AEAYIRTCLK AAPDFVPAKV AAAELAHQRG RLDEAAAAYE EILQRVPDDA AVMNNLAMIY
VRDEATLRRA LQLALTAYVR QPDSPQIMDT LGLCLTAAGR PAEAVRVLRR ASALLPDDQS
IRYHYAQALA AAGEKGAALK EVSTALQGSE FSEAGEARKL LKKLGG
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