| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dde_0537 |
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| Symbol | |
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| ID | 3756483 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfovibrio desulfuricans subsp. desulfuricans str. G20 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007519 |
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| Strand | - |
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| Start bp | 547672 |
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| End bp | 549132 |
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| Gene Length | 1461 bp |
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| Protein Length | 486 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 637781397 |
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| Product | ribonuclease E |
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| Protein accession | YP_387033 |
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| Protein GI | 78355584 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1530] Ribonucleases G and E |
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| TIGRFAM ID | [TIGR00757] ribonuclease, Rne/Rng family |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.155114 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGAAAAGA CCCGCAAGGG CAAACGCAAG ATGTTCATCA GCGTGCTGCC CGAAGAACAG
GTTGAAGTTG TTCTCTCTGA AGAAGGCGTA ATTGTTGAAT ATTATGTAGA GATGGTGCAT
CAGGCCAAGA CCAAAGGCAA CATCTACAAA GGCATCATCA ACAACATAGA CTCCAACCTG
CAGGCCGCCT TTGTCAATTA CGGCGCCGAA AAAAACGGTT TTCTGCAGGT GGATGAAGTT
CACCCCGAAT ACTACTCGGC CCCCCACGAC CCTTCCAAAG GCAAAAAATA TCCTCTGCTG
CAGAAAGTGC TTAAAGCAGG ACAGGAAGTA CTGGTGCAGG TGGTCAAGGA ACCCACGGGT
TCCAAAGGTG CCTTCCTCAC CTCGTATCTT TCGCTGCCGG GACGTTTTCT GGTGCTCACC
CCCGGACGCG AACAGATAGG CGTTTCGCGC AAGGTGGAAT CGGAAGAAGA AAGAGTGCGC
CTGCGCGCCC TGCTTGAAGG TGCCACCCCC GGTCCCGGGC TGGGGCTTAT CGTACGCACG
GTTTCGGTGG GGCAGAGCAA AACAAGCATA CAGCGCGACC TGCAGTTTCT TAAACGCCTG
TGGAAGGATG TGCGCAAAAA AGGCACCGTG GAAAAAGCCC CCAGCCTTAT CTACAAGGAA
CTGGACCTTG CCGCACGGGC AGTGCGCGAC TATCTGACCG ACGATGTGGG CGAAGTGTGG
GTGGACGACG AACAGACAGC CGATGCCGTG CAGGAATTTG CCGCCATCGT CTTTCCGCGG
CGCACCAATC TGGTCAAACG GCATAAAGAC ACCGACCGCA CACTCTGGGA GCGGTTCAGC
ATGCAGAAGC AGCTGGACCA GATATATTCG CGCGAAGTAT CGCTGCCCAG CGGCGGCAGG
CTGGTTTTCG ACCAGACCGA AGCGCTTATG GCCATCGATA TCAACTCCGG AAAAATCGCC
GGCAAGACAA ATTTCGAATC CATGGCTCTG CGCACCAATA TGGAAGCCGC CGAAACCATC
GCCCAGCAGC TCAAGCTGCG TGACATCGGC GGGCAGATAG TTGTCGACTT CATTGAAATG
CGCGACAGAA ACCACTGGCG CGAAGTGGAA AAAACCCTGC GCGCCGCCAT GAAAAACGAC
CGCGCCAGAC ACGATGTGGG CAAAATGAGC CGTTTCGGCC TGCTGCAGAT AGTGCGGCAG
CGTCTGGGGT CTTCCGCCCT GTCCATAAGC ACCGAACCCT GCCCGTGCTG CAAAGGCACA
GGGCTGCGCC GCAACATGGA ATGGCAGGCC ATGCAGGCCC TGAAGGATAT CCACAGACAG
CTGCGCGCCA CCACGGCCTC TTCGCTGCGC TGGGAAGCTC CGGAAGAACT GGGCATGTAC
CTGCTGAACC ATAAACGCGG ACACCTGACC GAACTGGAAA ACAGGTTCGA ACGCGACATC
GACATCGCCA TACGGAGGTA G
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| Protein sequence | MEKTRKGKRK MFISVLPEEQ VEVVLSEEGV IVEYYVEMVH QAKTKGNIYK GIINNIDSNL
QAAFVNYGAE KNGFLQVDEV HPEYYSAPHD PSKGKKYPLL QKVLKAGQEV LVQVVKEPTG
SKGAFLTSYL SLPGRFLVLT PGREQIGVSR KVESEEERVR LRALLEGATP GPGLGLIVRT
VSVGQSKTSI QRDLQFLKRL WKDVRKKGTV EKAPSLIYKE LDLAARAVRD YLTDDVGEVW
VDDEQTADAV QEFAAIVFPR RTNLVKRHKD TDRTLWERFS MQKQLDQIYS REVSLPSGGR
LVFDQTEALM AIDINSGKIA GKTNFESMAL RTNMEAAETI AQQLKLRDIG GQIVVDFIEM
RDRNHWREVE KTLRAAMKND RARHDVGKMS RFGLLQIVRQ RLGSSALSIS TEPCPCCKGT
GLRRNMEWQA MQALKDIHRQ LRATTASSLR WEAPEELGMY LLNHKRGHLT ELENRFERDI
DIAIRR
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