Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dde_0456 |
Symbol | |
ID | 3756271 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Desulfovibrio desulfuricans subsp. desulfuricans str. G20 |
Kingdom | Bacteria |
Replicon accession | NC_007519 |
Strand | + |
Start bp | 465122 |
End bp | 465793 |
Gene Length | 672 bp |
Protein Length | 223 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 637781316 |
Product | TonB-like |
Protein accession | YP_386952 |
Protein GI | 78355503 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0810] Periplasmic protein TonB, links inner and outer membranes |
TIGRFAM ID | [TIGR01352] TonB family C-terminal domain |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 0.00460811 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACGGATT GGTGCGTGCG GATGGCGGCC GTGGGCGGCG GAGTGGGGGT CACGCTGTTG CTGCTGCTTT TCCTGCTGGC AGGAACTGCT CCCCGCGTGG TGACAGATGA GCCTGTGGTG CATGGCGCGG TCAGGCTGTC TTCGTTTACC GAAGCTCCGG TACGCGAGAC CGAGACCTAT GCCACCCGCG ATGTGCAGCA GGTGCAGCCC CTTGAAAAGA TGTCAGAAAT GGATGTGTCT CTTGATTCGC CGCAGTTGGA AATGGACATG CCCTCCATGG AAATGGATTT CGCGCCCGAA CTGGCAGGCA CCGTGCCGCT GAGCGGAGTC CCTTCCGTGG CTTCGGCCGG CGGGTTGTCG GCGCCGTCGG GCGGTGCCTT TACGCTGGGC GAGGTTGATG AACAGCCGCG CCCGCTTTAT GCGCCGGCCC CGCTGTATCC GATGCAGGAA AAACGTCTGG GGCGTGAATG CACCGTGGTG GTGCGCATTC TGCTGGCTGA GGACGGAACG GTGAAACAGG CGACTCCCGT GTATGCGGAA GACGATACCC GGACGTTTCA TGAGGCCGCC GTGGAAACGG TGCTGCGGTG GCGTTTTGTA CCCTGCCGCA AAGACGGCAG GGCCGTGCAG TGCATTGCCG AGCAGCCTTT TACCTTTTCA CTGCATCAGT AA
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Protein sequence | MTDWCVRMAA VGGGVGVTLL LLLFLLAGTA PRVVTDEPVV HGAVRLSSFT EAPVRETETY ATRDVQQVQP LEKMSEMDVS LDSPQLEMDM PSMEMDFAPE LAGTVPLSGV PSVASAGGLS APSGGAFTLG EVDEQPRPLY APAPLYPMQE KRLGRECTVV VRILLAEDGT VKQATPVYAE DDTRTFHEAA VETVLRWRFV PCRKDGRAVQ CIAEQPFTFS LHQ
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