| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dde_0402 |
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| Symbol | |
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| ID | 3756295 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfovibrio desulfuricans subsp. desulfuricans str. G20 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007519 |
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| Strand | - |
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| Start bp | 397987 |
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| End bp | 399198 |
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| Gene Length | 1212 bp |
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| Protein Length | 403 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 637781262 |
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| Product | secretion protein HlyD |
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| Protein accession | YP_386898 |
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| Protein GI | 78355449 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 29 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGATTTAC GTATGCATAA CCATTGTCAT CTGCGATCCG GTCATCCTGC ACCGGCAACA
TCGCGCACAG TTCACGTCTC CGCGGTATTC ACGGCATCGG TACTGCTGTG GTTCACCGTG
CTGGCCACCT TTGCCTATGC GGCGCCCGGC GCCGGAGCAC AAGGCCCTGC CCCCGCCGTC
ACCGTGGAAA AAGTTCAGGT GAAGGACGCC AACCCCCCGC AGGCATATGT GGGCAGGGTT
GAAGCCATTC AGGCAGTGGA CCTGCAGCCG AGAGTCGAAG GATATCTCAC GGCAGTAAAC
GTCACCGAAG GCGGCATGGT AAACGCCGGT GACGTTCTTT TTGTCATCGA GCAGACAACC
TACCGTGCCC GTGTCAATGC CGACGCCGCC GCCGTGGACA AGGCACAGGC TTCGCTGGAC
AGGGCCGAAA AATACTTAAA GCGCCTGCGT TCCACCCGTA AAAGCGGTGT GGCCGCGGCA
GACATGGACG CGGCAGTCAG CGACCAGCTG CAGGCAAAGG CCCAGCTGCA GGAAGCCATG
GCCGCGCTTG AGCAGTCCAG ACTTAATCTG GGGTACACCA CCATCACTGC TCCCATCCAC
GGACGCATCG GTCGTGTTCA GGTGACCAAG GGCAACCTTG TGACTCCCTC CACGGGAGCG
CTGGCACGCA TCGTACAGGT AGACCCCATC CGTGTGGTCT TTTCGCTGAA CGAGCAGGAT
TATCTGGCCA TGAGCCGGCA GGTGTCTCCG CTGCCTTCGG GCGAGGTTTC ATTTTCCGAC
GTGGTCGTGC CGCGCCTACG CCTTTCCGAC GGAACGGTCT ACCCCGCACA GGGACGCATA
GATTTTGTGG ATAACGAAAT AGATGCCCGT ACCGGCACCA TTGCCGTGCG CGCGGTGTTT
GACAACCCGG GCCAGCTGCT GCTGCCGGGC GGTTATGTAA CCGTGGAACT GACCAAGGCC
GCCGCAAAGC CGCGCCCGGT GGTACCGCAG GCAGCCGTGC AGGAAGACAA GGACGGCCGG
TTTGTACTGG TAGTGGGAGA AGGCAACGTG GTGAGTGTAC GCCGCATCGT CACCGGAGCA
ACCGTCGGCG CCAGCTGGGT TGTGGAAGAC GGACTGCAGG GCGGCGAAAC CATCATTGTG
CACGGACTGC AGAAAGCCCG CGTGGGCCAG CCCGTGGAAC CCAAGCTTGA CGCCACCCGC
GGTCAGGAGT AG
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| Protein sequence | MDLRMHNHCH LRSGHPAPAT SRTVHVSAVF TASVLLWFTV LATFAYAAPG AGAQGPAPAV
TVEKVQVKDA NPPQAYVGRV EAIQAVDLQP RVEGYLTAVN VTEGGMVNAG DVLFVIEQTT
YRARVNADAA AVDKAQASLD RAEKYLKRLR STRKSGVAAA DMDAAVSDQL QAKAQLQEAM
AALEQSRLNL GYTTITAPIH GRIGRVQVTK GNLVTPSTGA LARIVQVDPI RVVFSLNEQD
YLAMSRQVSP LPSGEVSFSD VVVPRLRLSD GTVYPAQGRI DFVDNEIDAR TGTIAVRAVF
DNPGQLLLPG GYVTVELTKA AAKPRPVVPQ AAVQEDKDGR FVLVVGEGNV VSVRRIVTGA
TVGASWVVED GLQGGETIIV HGLQKARVGQ PVEPKLDATR GQE
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