Gene Dde_0110 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDde_0110 
Symbol 
ID3756428 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDesulfovibrio desulfuricans subsp. desulfuricans str. G20 
KingdomBacteria 
Replicon accessionNC_007519 
Strand
Start bp101732 
End bp103510 
Gene Length1779 bp 
Protein Length592 aa 
Translation table11 
GC content60% 
IMG OID637780968 
Productmulti-sensor signal transduction histidine kinase 
Protein accessionYP_386606 
Protein GI78355157 
COG category[T] Signal transduction mechanisms 
COG ID[COG3852] Signal transduction histidine kinase, nitrogen specific 
TIGRFAM ID[TIGR00229] PAS domain S-box 


Plasmid Coverage information

Num covering plasmid clones34 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCACTTCA GAAAAAAACA TTCTCTTCCC GGGCCGTTTG CCTCGCCGTG GCTGGTTATC 
GGCGCGGCGG TCATTCTGGG CGTGGTGGTT GTGGCACTTT CAGTGCGCAA CATCACCCGT
TCGGAACAAT ACATGGCCAA TATCCTGCTG GAAAAAGGCG GATCGCTTAT CAAGGCATTT
GAGGCCGGAG CACGAACGGG CATGCGCGGC AGCGCGTTCC GCCTGCAGGT GCTGCTGGAA
GAAATGGCCG ATCAGCCGGA TATTGATTTC ATTGCCCTGA CAGACAGGGA AGGCAATATT
GTGGCCCACA GCAACAACGA ACAGGTAGGC AAACGGCTTT TCGGCGCCGA GGTGACCACC
GACCTGCTGC GGCCTGACAC ACGCCCGAGG TGGAGCATTT TCGGGCAGGC CGGTAAACGA
TACTTTGTGG TCTACCGTGA ATTTGCACCG CTGCAGGGCC GCCATGCCCG CAGGGGACAC
ATGATGCCGC ACATGCGCAA CCACGCGTGG GATAACTGGC AGCAGCCGGA CGGCCCGCCG
CCCATCATTT TTGTCGGGTT CGACGTTCAG CCGTTCGAGG ACGCCCGCAG ACAGGACAAA
CAGCACACCA TGACCATGGC AGCCATAGTG CTGCTGTTGG GGGTTGCGGG TTTCATATCG
CTTATCTGGG CACAGAATGT CCGCCGCGCA CGCAAAGAGC TGGAAAGCAC ACAGGCCCTG
TCGGATGAGA TTGTTTCCAA TCTCCCCGAA GGTCTGGTGG TGCTGGATGC CGCCGGAGAT
GTTTCTTTCA TGAACAATGC GGCCCGCGCC ATGCTGGGAG ACGGTACCGC CGCTCACGAT
GCGCACGAAG CAGCCGCAAG CTGCCCGCCG CTGCCGCCGG TACTCATGCA TGCCGTACGC
CAGCTGGACA CCCAGCACAT ACTGAGCGGC AGAGAAACGG TGCTTTCCGG CACCGGAGGC
CCTGTCCCCG TCAGTGTTAC CGGTGCGTGC ATAACAGGCG AAGACGGTTC GCTGATGGGC
AAACTGCTGC TGCTGCACGA CCTGAGCGAA GTGCGCAGAC TGGAAGAAGA AGTACGCAGG
CGCGAAAAGC TGGCAGCCAT AGGCAGTCTG GCTGCGGGGG TGGCTCACGA AATACGCAAT
CCGCTCAGCT CCATCAAAGG CTATGCCACC TATTTCGGCA CCCGCTTTGC CGAAGGCAGC
GAAGACCGCG ATGCCGCCCG GATCATGGTG CAGGAGGTGG ACAGGCTCAA CCGCGTCATT
TCCGACCTTA TCGGTCTGGC CCGCCCGTCG GACCTGTCTT TAAAGCCCAG CAGACCGGAA
TCGCTGGCAG AAAACGTGCT CCGCCTTATC CGGCAGGATG CCGCGGGCAA AAACATAGAC
TTGCGGTTCG CCGCGGCGGA CGACCTGCCG CAGGCAGTGC TCGACCCCGA CAGAGTGACG
CAGGCGCTGC TGAATGTCTG CCTTAACGCA CTGGATGCCA TGGAAAGCGG CGGCGTACTG
ACGCTGAGCG TTGACACCGA CAGTACCTCT TCCGAAGGCC GCAGGCTGCT GCGGTTCAAG
GTGCGTGACA CGGGCTGCGG CATAACGCCC GAAACCCTGA GCACCATGTT TGACCCGTAT
TTCACCACCA AAAGTCAGGG AACGGGGCTC GGGCTGGCCA TTGTGCACAA AATAGTGGAG
GCCCACGGCG GCGAAATAGC CGTGCAGTCT TCCGTAGGCA GCGGAACGGA AATATCTCTC
ATTCTGCCGC TTGAACCGCA ACGCAACGCG AACAGCTGA
 
Protein sequence
MHFRKKHSLP GPFASPWLVI GAAVILGVVV VALSVRNITR SEQYMANILL EKGGSLIKAF 
EAGARTGMRG SAFRLQVLLE EMADQPDIDF IALTDREGNI VAHSNNEQVG KRLFGAEVTT
DLLRPDTRPR WSIFGQAGKR YFVVYREFAP LQGRHARRGH MMPHMRNHAW DNWQQPDGPP
PIIFVGFDVQ PFEDARRQDK QHTMTMAAIV LLLGVAGFIS LIWAQNVRRA RKELESTQAL
SDEIVSNLPE GLVVLDAAGD VSFMNNAARA MLGDGTAAHD AHEAAASCPP LPPVLMHAVR
QLDTQHILSG RETVLSGTGG PVPVSVTGAC ITGEDGSLMG KLLLLHDLSE VRRLEEEVRR
REKLAAIGSL AAGVAHEIRN PLSSIKGYAT YFGTRFAEGS EDRDAARIMV QEVDRLNRVI
SDLIGLARPS DLSLKPSRPE SLAENVLRLI RQDAAGKNID LRFAAADDLP QAVLDPDRVT
QALLNVCLNA LDAMESGGVL TLSVDTDSTS SEGRRLLRFK VRDTGCGITP ETLSTMFDPY
FTTKSQGTGL GLAIVHKIVE AHGGEIAVQS SVGSGTEISL ILPLEPQRNA NS