| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Gmet_3225 |
|---|
| Symbol | |
|---|
| ID | 3740941 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Geobacter metallireducens GS-15 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007517 |
|---|
| Strand | + |
|---|
| Start bp | 3628008 |
|---|
| End bp | 3629708 |
|---|
| Gene Length | 1701 bp |
|---|
| Protein Length | 566 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 637780512 |
|---|
| Product | peptidoglycan-binding LysM |
|---|
| Protein accession | YP_386163 |
|---|
| Protein GI | 78224416 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 37 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 41 |
|---|
| Fosmid unclonability p-value | 0.133183 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACATCAC GCACCTACAT GAGTTTTTGC GCCGCCTTTA CCCTCTGGGG ACTTCTCGGA
CCGCTGCAGG CTGGAACCGC CCAGGCTGCC TCCCCCTCCT TCGAACTGGA GCTGAAGGAC
CTGGAAACGA CGAAGCCTTC CCCCCAACAC CGGCGGCAAC CCGTCCGCCC CCCCCGCAAG
GATAGTGCCC GGAAACCAGA CACCAAGCCG GACACCCCAG CCTCAGAAGC ATCCGGCGAC
TATACCCGCT ATACCGTCAG GCCCGGCGAC TTTCTCTTTA AGATCCTGAT CCGCGATTTC
GGCCTCAGCA ACGCCCAGGC CGAGGCGCTC ATCCCGGAAA TCCAACGAAT CAACAAATTG
CCGAGCACCA CGCGCCTCGA GGTGGGACAG ACCATCCTCA TTCCCCGTCA CCGCCGGGCA
TCATCCCTGG CTAAGGCCGC TACACCTGCA CCCACTCCGG CATCCACGCA TGGATCCGCA
TCTGCACCGG AAGGACACCG CCCCCTCATC ATCCCGCCTG CTCCGTCATC GGCGCCGGCT
CCCTCCACCG TCGTCACCTC GCCCCCTGAG CCGGTGGCGT CCTCACAACA TGAAACAGCA
ACGGAAACGG TGGCGTCGCC TCCGCCGCCA CCGCCACTCA CACTATCGGG CCATGAAACT
GTGTCGCCTG CACCAGCCAC GGAAGCAAAG GCTGACCTTT CCTTTTCCAC GGCACTTATC
CGTCTGTGGG AAAACCTCGT TCCCGGCCAG CGGCAAATCG AACCTTTGAC CGTCAACGGG
AAGGTTCTCG ACCCGGCCGA CTACCCGCTC CTCCTGGCTG CCGATGGAGG CCGGATTCTG
GTGGATCTCC GGGGCACCCT CCAACCCCAG CTTCGTACTC AATTGGCTCA AAAGTACCCC
GACATCCACA TTGTCACCCG GGGCAACGAT AGCCTCAAGA CGCTCGTCGC AACCCTCGTG
CGAGCAGCCG AGTTCGCCCG GGCAGAAGAG AACGTGGCCG TCGACCTGGG AGCTGATCCC
ACCCTCTCCG TCCGGGCAGA CTTCCGCATC GTGAGGCTTC CGACGGGCCG GGGGGGGCCC
GAAACCGTCC TCGTCTTTCT GGACGAACAT GGCCCCTGCC TTCCTCCCCC CCTCACCGAT
TACCTCCATC GGAAAGGTTA CCAGGTGGCC CAGTTCTGCG ACCGTCCGGG AGACACCGTT
GCCGAGCCGG GGTACGACCT CAGGGCCATC CCTCCTTCCA CACCTTGCGA TGTGGCGGTT
TCGCTTCTTA ACGCACTTTC CCTGAAACTG GACCGCAACC GTATCGTTTC CGGGGCCATG
GGAGAGAACT CGGAGAACCG GTTCAGCATC AGGGTAGAAG GATACTTCGA GGCGGGGGGA
AAGCGCTTTA TCCTCGATTG CTCAGGAAAC GATCCCTACA ACTACACCCT CTTCAGGCTC
CTCCAGGTGC AGGGTTACGG CATCATCCAA CCCCAGGAGA ACGATGATTT CACCGACGTA
ACGCGGCGTC TGCTCACTGA GCTCAACTAC CCCAACTCAT TTGGAAGGCA TGAAATGGAC
TACGGGCGGT ACAGGATCGC GATCACCGGC TTCAAGATTA CCCGCCGCGA TACGTCAGCC
GGCCGTCTCC TGCTCACGTC CCGGCCATCC GACCCGGTAT TTGCCGAGTT GCTGCGGTGG
GCTCCGGCTG AGAGGAAATA A
|
|---|
| Protein sequence | MTSRTYMSFC AAFTLWGLLG PLQAGTAQAA SPSFELELKD LETTKPSPQH RRQPVRPPRK
DSARKPDTKP DTPASEASGD YTRYTVRPGD FLFKILIRDF GLSNAQAEAL IPEIQRINKL
PSTTRLEVGQ TILIPRHRRA SSLAKAATPA PTPASTHGSA SAPEGHRPLI IPPAPSSAPA
PSTVVTSPPE PVASSQHETA TETVASPPPP PPLTLSGHET VSPAPATEAK ADLSFSTALI
RLWENLVPGQ RQIEPLTVNG KVLDPADYPL LLAADGGRIL VDLRGTLQPQ LRTQLAQKYP
DIHIVTRGND SLKTLVATLV RAAEFARAEE NVAVDLGADP TLSVRADFRI VRLPTGRGGP
ETVLVFLDEH GPCLPPPLTD YLHRKGYQVA QFCDRPGDTV AEPGYDLRAI PPSTPCDVAV
SLLNALSLKL DRNRIVSGAM GENSENRFSI RVEGYFEAGG KRFILDCSGN DPYNYTLFRL
LQVQGYGIIQ PQENDDFTDV TRRLLTELNY PNSFGRHEMD YGRYRIAITG FKITRRDTSA
GRLLLTSRPS DPVFAELLRW APAERK
|
|---|
| |