| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Gmet_3033 |
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| Symbol | |
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| ID | 3741229 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Geobacter metallireducens GS-15 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007517 |
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| Strand | - |
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| Start bp | 3418230 |
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| End bp | 3419444 |
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| Gene Length | 1215 bp |
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| Protein Length | 404 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 637780322 |
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| Product | tRNA pseudouridine synthase D, TruD |
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| Protein accession | YP_385973 |
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| Protein GI | 78224226 |
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| COG category | [S] Function unknown |
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| COG ID | [COG0585] Uncharacterized conserved protein |
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| TIGRFAM ID | [TIGR00094] tRNA pseudouridine synthase, TruD family |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 0.00845605 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 58 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGAGCGGCG AGAAGCGCTA TCTGACCGCC GGCCTCCCCG GCACCGGAGG CACCATCAAG
GAGACCGCCG ACGATTTCGT GGTGGAGGAG ATTCCCCTCT ACCTCCCCTG TGGCGAGGGA
GAGCACGTCT ACGCCCTCAT CGAGAAGCGG GGGGTGACGA CCCTGGACGC CATCCGCCGC
CTGGCCCGGG CACTGAAGCT CTCCGAGCGG GACGTGGGGT ATGCGGGCAT GAAGGATGCC
CGGGGGGTGA CCCGCCAGAC CGTGTCGCTC CCCCGGATGA AGCCCGAGGA GGTGCTCGCC
CTGGAGCTTC CCGGCATCCG CATTCTCTCC GCGGAACGGC ACCGGAACAA GCTGAAGCTG
GGGCACCTGG CGGGAAACCG GTTTCGGATC CGAGTCAGGG GGGTGGTGTC CGACGCCGTG
GCCCGGGCCG AGGCGATCCT GGCGGTGCTG GAACGGCGCG GCGTCCCCAA CCGCTTCGGG
GAGCAGCGCT ACGGTGCCCA GGGGAACAGC CATCTCATCG GCCGGGCCAT GCTGGCCGGC
GACTGGTGCG CTGCGGTGGA TCTCCTCATG GGCGATCCGG CAAAGGTTAC GGGGGAGGCA
TGGCGGAGCG CCATCGAGGC GTACCAACGA GGGGAACTGG AGGAGAGCCA GCGCCTCTTC
CCGGGCCACT GCCGCACCGA GCGGGACGTC ATCCAGCGTC TCGTGAAGCG CCCCGACGAC
TTCGAGGGGG CCTTCCGCGC GGTCAATCCC CGGCTCAGGA AGCTCTACCT CTCCGCCTGC
CAGTCGGCTC TTTTCGACCA CGTGGTGGAG GCCCGGCTCG ACTCCCTCGA CACCGTCCAG
GAGGGTGATC TGGCCTGGAA GCACGCCAAC GGCGCCTGTT TCCTGGTAAC GGACCCCGCG
GCCGAAGCGC CACGGGCGGA GCACTTCGAG ATCTCCCCCA CCGGACCCCT CTTCGGCTGC
CGGATGATGA TGCCCGAGGG TGAAGAGGGG GCGCTGGAAC GGTCGCTTCT GGCGGCCGAA
GGGGTGGAGC CGGCCAGCTT CGACCTCCCC GGCGGGCTCC GGATGGAGGG GGAGCGGCGA
CCCCTTCGGG TTCCCCTGGG GGATCCGCGG GCTTCCGCGG ACGCTGACGG GCTGGTGCTG
GAGTTCTCGC TTCCCAAGGG GAGCTACGCC ACGGCAGTCC TGCGGGAGGT CATGAAGGGG
GGTAGGCCGG ATTGA
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| Protein sequence | MSGEKRYLTA GLPGTGGTIK ETADDFVVEE IPLYLPCGEG EHVYALIEKR GVTTLDAIRR
LARALKLSER DVGYAGMKDA RGVTRQTVSL PRMKPEEVLA LELPGIRILS AERHRNKLKL
GHLAGNRFRI RVRGVVSDAV ARAEAILAVL ERRGVPNRFG EQRYGAQGNS HLIGRAMLAG
DWCAAVDLLM GDPAKVTGEA WRSAIEAYQR GELEESQRLF PGHCRTERDV IQRLVKRPDD
FEGAFRAVNP RLRKLYLSAC QSALFDHVVE ARLDSLDTVQ EGDLAWKHAN GACFLVTDPA
AEAPRAEHFE ISPTGPLFGC RMMMPEGEEG ALERSLLAAE GVEPASFDLP GGLRMEGERR
PLRVPLGDPR ASADADGLVL EFSLPKGSYA TAVLREVMKG GRPD
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