| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Gmet_2992 |
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| Symbol | dapF |
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| ID | 3740981 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Geobacter metallireducens GS-15 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007517 |
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| Strand | + |
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| Start bp | 3376980 |
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| End bp | 3377828 |
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| Gene Length | 849 bp |
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| Protein Length | 282 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 637780281 |
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| Product | diaminopimelate epimerase |
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| Protein accession | YP_385932 |
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| Protein GI | 78224185 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0253] Diaminopimelate epimerase |
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| TIGRFAM ID | [TIGR00652] diaminopimelate epimerase |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.0000000000459249 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 48 |
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| Fosmid unclonability p-value | 0.46742 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGAAATTTA CCAAGATGCA CGGCGCCGGC AACGACTACG TCTACGTGAA CTGCTTCGAG
GAGCGGGTCG ACAACCCGGA GCAGGTTGCC ATAAAGGTTT CCAACCGCAA CTTCGGCATC
GGCTCCGACG GCCTCATCCT CATCATGCCC TCCGACAAGG CCGACGTCCG GATGCGGATG
TTCAACTCCG ACGGCTCCGA GTCGGAGATG TGCGGCAACG GCATCCGCTG CGTGGCCAAG
TACGCCTACG ACCATGGCAT CGTCTCCAAG AAGGAGATCA CCGCCGAGAC CGGCGCCGGC
ATCCTGACGC TGCAGCTGGT GCCCGGTGCC GACGGCAAGA TCGAGAAGGT GCGGGTCAAC
ATGGGCGTTC CCCGACTGAA GCGGGCCGAG ATCCCCATGG CGGGCGAGCC CGCCGACGGG
CAGATCGTCA GCCAGCCCCT CAACATCCTC CACACCACCT TCAACATCAC CTGCGTCTCC
ATGGGGAACC CCCACTGCGT CATCTTCGTG GACGACGTGG AGAGCTTCCA GGTGGAAAAG
TACGGCCCCC TCATCGAGAA CCACGAGCTC TTCCCCCGCC GCACCAACGT GGAGTTCGTC
CAGATCATAT CCCGCACCGA GGTGCGCCAG CGGACCTGGG AGCGGGGCGC CGGCGAAACC
CTGGCCTGCG GCACCGGCGC CAGCGCCGTC TGCGTGGCCG GAGCCCTCAA CTGCCTCACC
GAGAAGAAGA TCCTCAACCA CCTCTCGGGC GGCGACCTGG AACTGGAATG GGCCGACGAC
GGCTTCCTCT ACATGACCGG CCCGGCCACG GAGGTCTTCT CCGGCGAGAT CGACCTGGCA
AAGCTGTAA
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| Protein sequence | MKFTKMHGAG NDYVYVNCFE ERVDNPEQVA IKVSNRNFGI GSDGLILIMP SDKADVRMRM
FNSDGSESEM CGNGIRCVAK YAYDHGIVSK KEITAETGAG ILTLQLVPGA DGKIEKVRVN
MGVPRLKRAE IPMAGEPADG QIVSQPLNIL HTTFNITCVS MGNPHCVIFV DDVESFQVEK
YGPLIENHEL FPRRTNVEFV QIISRTEVRQ RTWERGAGET LACGTGASAV CVAGALNCLT
EKKILNHLSG GDLELEWADD GFLYMTGPAT EVFSGEIDLA KL
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