| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Gmet_2946 |
|---|
| Symbol | |
|---|
| ID | 3740840 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Geobacter metallireducens GS-15 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007517 |
|---|
| Strand | - |
|---|
| Start bp | 3336579 |
|---|
| End bp | 3337715 |
|---|
| Gene Length | 1137 bp |
|---|
| Protein Length | 378 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 637780238 |
|---|
| Product | HAD family hydrolase |
|---|
| Protein accession | YP_385889 |
|---|
| Protein GI | 78224142 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1011] Predicted hydrolase (HAD superfamily) |
|---|
| TIGRFAM ID | [TIGR01509] haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 33 |
|---|
| Plasmid unclonability p-value | 0.913197 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 35 |
|---|
| Fosmid unclonability p-value | 0.0128991 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCGAAC GCCGCTTTTC CGTCTTTCTC GTACCTGCAT CCGATGACCG CCGCTGGGCC
CAGGGGGTGA TCGCCGAGCT TGCCGCCCGC TACGACACAC CTCCCTTCGA GCCCCACGTG
ACGGTCTACG GCGGTTCCTG CGTCGATGAT GGGGAGCTGG AGCCGGTACG CCAGGTTCTT
GCCGAGGCCG CGGCAGAGGG AGGGCCCATT ACCCTGCGGG TGTCAGGGCT TGGCGTGACC
GAGGAATATT TCAAGACCCT CTTTGTTTCC TTCGAAGAGG AACCCCGCCT GCGCCGGCTC
CACGAGGGGG TGAAAGGGGC GGTGGCCCGG GATTCGGGGT ACGTGCTCAT GCCGCACCTC
TCGCTCCTCT ACGCCGACAT GCCCCTGGCG GAAAAGGAGA TGGCGGCCCG CACCGTCGCC
CTGGACCGGG AGGAGATCCG TTTCGACGAG GTGAAGATCG TGACCCCGGA CTCGATCACC
GGCTGGAGCG ATGTCAGACG GTGGCAGACC CTCTTCCGGG TGCGGCTCGG GGAGCCGGTA
ATCCGGGCGG TCCTCTTCGA CTACGGCGGG GTGCTGGCCG AAGAGGGGTT CCGGGAAGGG
CTCTTCGAGA TCGCCCGCCG CCAGGGGCTC GACCCCATCG CGGTGCATGG TGCCGGCATG
GAGGCAGTCT ACGGGAGCGG CTATGTCCTC GGGAAGGGGA GCGAGACCGC GTTCTGGCGC
CGGATGCGGG AACAGGCCGG CCTGCGGGGG AGCGCCCGGG AGTTGTCGGC CCTCATCCTC
GACCGCTTCG TCCTCCGCCC CGGGATGCTG GAGCTCGTCC GGGCCCTGCG GGCGAAGGGG
TACATCACCG CCATCGTCAG CGACCAGACC GATTGGCTCG AATGGCTCGA CCGGCGCGAC
GGCTTTTTCC GGGAGTTCGA CCGGGTCTTC AACAGCTACC GGCTCGGCAA GGGGAAGCGG
GATCCGTCCC TCTTCGACGA CGTGGCCCGG GAGCTCGGCA TCGAACCTCG GCAGGCCCTC
TTCGTGGACG ACATGCTCGC CAACGTGGTG CGGGCCGAAA GCCGGGGGGT GCGGGGGATC
GTGTTCGAGG ACGAAGCGCG GTTCCGGCGG GAACTCAGGC GGTACGTGGA GGTATGA
|
|---|
| Protein sequence | MTERRFSVFL VPASDDRRWA QGVIAELAAR YDTPPFEPHV TVYGGSCVDD GELEPVRQVL
AEAAAEGGPI TLRVSGLGVT EEYFKTLFVS FEEEPRLRRL HEGVKGAVAR DSGYVLMPHL
SLLYADMPLA EKEMAARTVA LDREEIRFDE VKIVTPDSIT GWSDVRRWQT LFRVRLGEPV
IRAVLFDYGG VLAEEGFREG LFEIARRQGL DPIAVHGAGM EAVYGSGYVL GKGSETAFWR
RMREQAGLRG SARELSALIL DRFVLRPGML ELVRALRAKG YITAIVSDQT DWLEWLDRRD
GFFREFDRVF NSYRLGKGKR DPSLFDDVAR ELGIEPRQAL FVDDMLANVV RAESRGVRGI
VFEDEARFRR ELRRYVEV
|
|---|
| |