| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Gmet_1213 |
|---|
| Symbol | |
|---|
| ID | 3738753 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Geobacter metallireducens GS-15 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007517 |
|---|
| Strand | - |
|---|
| Start bp | 1361075 |
|---|
| End bp | 1365325 |
|---|
| Gene Length | 4251 bp |
|---|
| Protein Length | 1416 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 637778493 |
|---|
| Product | NACHT nucleoside triphosphatase |
|---|
| Protein accession | YP_384175 |
|---|
| Protein GI | 78222428 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG2319] FOG: WD40 repeat |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.349149 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 26 |
|---|
| Fosmid unclonability p-value | 0.000475649 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGAAAATCA TCCGCCTCTT CATATCCTCC ACCTTCCGCG ACATGCACGC GGAGCGGGAC
TGGCTGAACC GGGTCGTCTT TCCGGAACTG CGGAGCCGCT GCCGGCGGCG GGGTGCGGAG
TTCGTGGGGG TGGATCTCCG CTGGGGGGTG ACGGAGGAGG AGTCCCGGCA ACGGGGGGCA
CTCTCGGTCT GCCTCGACGA GATCGAACAC TGTGACCTCT TCCTGGGGCT CCTGGGCGAG
CGATACGGCT GGGTGCCGCC TCCGGAGAAG GTGCCGGCGG AGCTCTTTGC CGCGGTGCGG
GACAGTGGAC AGTTGAGCGA GGAGGAGATC ACCCTTGTGG ACGCCTGCTA CCAGTGGGAC
CGGACCACGC TGCCGGCCCG TTTCCGGCTC CGGAGAGACG CGGCAATCTC CCCGGAAACG
GCCGATACCC TCACCCGCCT CTGGCAGCGA GCCGGACTCC TCGGCGCCGG GGAGTCGGCG
ACGGCCCTTG AGATGAGGCA CGGCGCACTC AACCGCAGCC TCGCCCAGGG GAAAGCCCTC
ATCTTTCTCC GCTCCGAGGG AATCCATCGC CACTCCGCAT TCCCCCCAGC CTGCATTCCG
ATCTTTACGG AGCCCGAGAC CGAGGCTCAA CAGCGGCTGT CCCGCCTGCG GGAGGAACTC
CGCGCCGCAG CCGGACCAAA CCTGATCGTG CGGCAGTACC GGGCCGGCTT TGGCGGTTTC
AGGATCGACC CCCTCTTCCT GCCGGCAGCG GAGGCTGGCA GCGCACTGCA GGACGGTGTC
ATCAAGCCGG AGGAGTGGGG TATAATCAGC GAGAAGGCCC GCCAGGCGGT GGCTACCCAC
GGCACCATTG CCCTTACGGG GATGGAGGAA TTCGGGACCC GGGTCCTCAA CGATCTCTGG
TGGGCCATTG AGCCGCTCCT GAAAAATGGG AAGCGCCCAG AGATCACGGG GCAGTCGTGG
CACACGCGAT TCGCCCGGGA GCGGGCTGCT CGCTGCCTGG GCCGTGACGA CGGGATAGCC
TTGGTCATGG GGTACATCCA GGACCAAGGC GACCAATCAC CATATATACT TACCGGTTTA
CCTGGTTGCG GCAAGTCGAC ACTTATGGCA GCCTGCGTCG AACGCTTGCG GGAAAAATCC
CCCGACATGG TGGTGATCCC CTGGTTTGTG GGAGCGGCCC CCGGATCCAC GGAGGTCACC
GCCATGCTCC GCTCCCTCTG CGAGCAGCTC CGCCGCGCCT GCCGCCTGGA TTTGGAACCA
TCTCCCGACC CCGACAAGCT GCGACTCCAG CTCCCCGCCT TCCTGGCCGC TGCCGGGGCA
GTGCGGCCGG TGGCGCTTTT CATCGACGCT CTCAACCAAC TGGACCCGTT GGGGGGGAGC
CACGGGCTGG ACTGGTTTCC CCGAACCCTG GCGCCAACGG TAAGGGTGGT GGCCAGTACC
CTTGCCGGCC CCTGCCTCGA CCGACTGACG GAGCGCCTGC CGGCCGATCA CCTCGTTATC
CTCCCCCCGC TACCGGCCGA CTCTCGCGCC ACCCTCGCAG AAGAGCATCT GGCCCGGCGG
GGGAAGAGGC TCTCCGCCAC CCAGCAGGCC CTGCTCCTGG ACACCGCGGC CCGGCCAGAC
GCGGCCCTCC CCCTCTACCT CGTGGCGGCC CTAGAGGAAC TCTGCTGCCA CGGCGACTTC
GAGACCCTTA CGGAGCGGAT CGCGGCCCTG CCGCCGACGG TGACGGAGCT CTTCGACCAG
ATCCTCGAAC GGCTTGAGCG GGACCACGGC GCCGATCTGG CCACCGCGGC ACTGTCGGCC
GTGGCCGTTT CCCGGGACGG ACTCCTGGAG CCGGAAATTA TCGACCTCAT CAGGGATGGG
GGCGAGGCCA CATCACCTCT CTTCTGGACC CGCTTTTACC GCGCCCTGGA GCCTTTTCTC
CGCCCGTCCG GCGAGGAGGG GGGCGGAGGG CTCATCGGCT TCTTCCACGA GCAGCTCCGC
TTTGCCGCCT TCCGCCGCTA CCTGGCCATG GATCCCCCTG CCGCGCTGCC GAGCAGCCAG
TTTCGGCAGG CCCACGAACG GCTGGCCGGC TACTTTCGGG CAGGCGCCCG GAAAAACGGT
GCCGACGGAG AGTGGAATCC GGAGCACCCC CGCCCCCTGG CCGAACTCCC CTTCCACCTG
GCCGGCGCGG GCAAGGAAGC AGTGCTGCGG TCCCTTATCT TCGATTTCGC CTGGCTCCAA
ACGAAGCTCC AAGCCCTCGA CGTGGCCGCG CTCCTGGCGG ATCTGAATCT TCTCCCCCCC
GAGCCGGCCA TCGCCCACCT GGCCCATGCC CTGCGGCTTT CGACAAGCGT CGTGGCCGTG
GACAAATCCC AGTTCGCCGG CCAACTGACG GGTCGGCTCC TGTCGCGGCA GGAACCGGAA
CTCCGGGCGC TCATCACTCA GGCAGGAGCC CACCGGGGCA ATGGGTGGCT GAAGCCGGCA
ACCCCTTCCC TCTATCAGGC TGGGGGGGCC ATCGAGCGGA TCCTCGGCAC CCACACCCAT
CCGGTGCGGG GTGTCGCCAT CACCCCCGAC GGCAGGCGGG CCATCTCTGC TGCCGACGAC
GCGACGCTGC GGGTCTGGGA CCTGGCGAGC GGCGCGGAAC TGATGGTTCT CAAGGGGCAC
GAGTCCGAAG TGTTGGCCGT GGCGGTCTTT CCGGACGGCA GACGGATCGC CTCCGGCTCC
CGGGACGCCA CCGTCCGGCT CTGGGATACG GAAACCGGCG AATGCCTCCT GATCCTACGG
GGACACACCC TGCCGGTCAG CTCCCTGGCA GCGGCGCCCG ACGGCAGTTG GCTGGCCTCG
GGCTCCTGGG ACAACGTGGT GCGGCTCTGG GACCCGGAAA CCGGCCAGGA GCGGGGAATC
ATCTGGGGAC ATACTTACGG GATAAACGCC CTGGCCGTCA CCCCCGACGG CCAGACCCTC
CTCTCGGCCT CCTTCGACCG GACCATCAAG GCCTGGAATC CTGCAAACGG TGAGCTTCGC
CGCGCCTTCG AGGGGCACAG CCGGCAGGTG CTGGCCGTGG CAGTGACCCC CGATGGCCGT
CAGTTCGTCT CCGGCTCGGA AGATTGCACC CTGAAGCGGT GGGATTTGGC GGAAGGGACC
GAGCTCTGGA CCTACTACGG TCATACCGAT GGGGTCAGTT CCGTCACGGT CTCCCCGGAC
GGACGGGAGA TCGTCTCGGG CTCCTGGGAT TTCACCCTGA GGCGCTGGGA CCTGGAGCAA
CCCCGGGCGC GGGAGGTCCT GCGGGGACAC ACCTTCAAGG TGAGCGCCGC GGCCATAACG
CCCGACGGCG CCACCGCCGT CTCCGCCGCC CAGGATACCA CCCTCAAGGT CTGGAATCTG
GCCGGCGCCA CTGCCTCGCC GCCACTCACC GGCCACGGTG CCACGGTCAC TGCCGCGGTC
TTCACCCCTT CCGGAAACCG GTTCGTCACC GCCTCCTGGG ACCGAAAAAT CAAGGTCTGG
GGAGCCGCCA CCGGCGCCGA GATATTTTCT CTCACCGGCC ACGAAACCTG GGTACGCGAC
GTGGCCATCA CCCCTGACGG CCGCCGCGCC GTCACCGCCT CCCACGACCG CACCGTGCGG
GTCTGGGACC TGGAGGAGCG GCGGGAACTA TGGGTCTTCC GGGGCCACGA CGCGGAAGTC
TGGTCGGTGG TGGTCACCCC CGATGGCCGG CGCGCCTTTT CCGCCGGTCA GGACGCCACC
CTGCGGGAGT GGGACCTGGA AACCTTCCAG CCCCTCGGCG TCACGGGTCT CCCCTCCCCG
GCCCGGGTTA CCGATGTCTC CCCCGACGGC ACGCTCCTGG CCCTTGTGGC CCACTTCCCA
ACCTTCATCA TCCGGGACCT CCGCGCCGGA AGCCTCCGTC CCTACCCTCC CCTGCACCGG
GACCAGGTGA ACGACTGCGT CTTCCTCCCC GACGGACTCC GGGTTCTCAC CGCCTCCAGC
GACCGGACCC TGAAACTCTG GCACCTCACC ACCGGCCAGG TCATGTACAC CCTGCGGGGC
CACAACCGGG AGATATGGAG CGTCTCCGTC ACCCCCGACG GCCGCCGGGC CGTCTCCGCC
TCCGACGATA GAAGCCTCAT CCTCTGGGAC CTGGAGGCAC TTAAGCCCCT TGCCACCTTC
ACCGGCGACG GTGCGCTGGT ACCAGCCGCC ATCACGCCCG ACGGCAAAAC CGTCGTCACT
GGTGACGAGG CCGGGGCGGT GCATCTGCTG CGGGCGGAAG GGGTGCGGTA A
|
|---|
| Protein sequence | MKIIRLFISS TFRDMHAERD WLNRVVFPEL RSRCRRRGAE FVGVDLRWGV TEEESRQRGA
LSVCLDEIEH CDLFLGLLGE RYGWVPPPEK VPAELFAAVR DSGQLSEEEI TLVDACYQWD
RTTLPARFRL RRDAAISPET ADTLTRLWQR AGLLGAGESA TALEMRHGAL NRSLAQGKAL
IFLRSEGIHR HSAFPPACIP IFTEPETEAQ QRLSRLREEL RAAAGPNLIV RQYRAGFGGF
RIDPLFLPAA EAGSALQDGV IKPEEWGIIS EKARQAVATH GTIALTGMEE FGTRVLNDLW
WAIEPLLKNG KRPEITGQSW HTRFARERAA RCLGRDDGIA LVMGYIQDQG DQSPYILTGL
PGCGKSTLMA ACVERLREKS PDMVVIPWFV GAAPGSTEVT AMLRSLCEQL RRACRLDLEP
SPDPDKLRLQ LPAFLAAAGA VRPVALFIDA LNQLDPLGGS HGLDWFPRTL APTVRVVAST
LAGPCLDRLT ERLPADHLVI LPPLPADSRA TLAEEHLARR GKRLSATQQA LLLDTAARPD
AALPLYLVAA LEELCCHGDF ETLTERIAAL PPTVTELFDQ ILERLERDHG ADLATAALSA
VAVSRDGLLE PEIIDLIRDG GEATSPLFWT RFYRALEPFL RPSGEEGGGG LIGFFHEQLR
FAAFRRYLAM DPPAALPSSQ FRQAHERLAG YFRAGARKNG ADGEWNPEHP RPLAELPFHL
AGAGKEAVLR SLIFDFAWLQ TKLQALDVAA LLADLNLLPP EPAIAHLAHA LRLSTSVVAV
DKSQFAGQLT GRLLSRQEPE LRALITQAGA HRGNGWLKPA TPSLYQAGGA IERILGTHTH
PVRGVAITPD GRRAISAADD ATLRVWDLAS GAELMVLKGH ESEVLAVAVF PDGRRIASGS
RDATVRLWDT ETGECLLILR GHTLPVSSLA AAPDGSWLAS GSWDNVVRLW DPETGQERGI
IWGHTYGINA LAVTPDGQTL LSASFDRTIK AWNPANGELR RAFEGHSRQV LAVAVTPDGR
QFVSGSEDCT LKRWDLAEGT ELWTYYGHTD GVSSVTVSPD GREIVSGSWD FTLRRWDLEQ
PRAREVLRGH TFKVSAAAIT PDGATAVSAA QDTTLKVWNL AGATASPPLT GHGATVTAAV
FTPSGNRFVT ASWDRKIKVW GAATGAEIFS LTGHETWVRD VAITPDGRRA VTASHDRTVR
VWDLEERREL WVFRGHDAEV WSVVVTPDGR RAFSAGQDAT LREWDLETFQ PLGVTGLPSP
ARVTDVSPDG TLLALVAHFP TFIIRDLRAG SLRPYPPLHR DQVNDCVFLP DGLRVLTASS
DRTLKLWHLT TGQVMYTLRG HNREIWSVSV TPDGRRAVSA SDDRSLILWD LEALKPLATF
TGDGALVPAA ITPDGKTVVT GDEAGAVHLL RAEGVR
|
|---|
| |