| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Gmet_1158 |
|---|
| Symbol | |
|---|
| ID | 3740385 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Geobacter metallireducens GS-15 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007517 |
|---|
| Strand | + |
|---|
| Start bp | 1284271 |
|---|
| End bp | 1285164 |
|---|
| Gene Length | 894 bp |
|---|
| Protein Length | 297 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 637778434 |
|---|
| Product | TonB-like |
|---|
| Protein accession | YP_384121 |
|---|
| Protein GI | 78222374 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0810] Periplasmic protein TonB, links inner and outer membranes |
|---|
| TIGRFAM ID | [TIGR01352] TonB family C-terminal domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.000000294867 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 32 |
|---|
| Fosmid unclonability p-value | 0.0031097 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | decreased coverage |
|---|
| |
Sequence |
| Gene sequence | ATGCCTGATA AATACGTCGA AAAATCCTTT CTCTATCTCG TAGCCCTCTC ACTCCTACTT
CACGTGGGTC TGTTCGCTCT GATCATTCTG TATCCCCAGG CAAAGCCGGT GCTGCGCCAG
GAGCCGATCA TGATCGATTT GGAGGATATT CCCGATCTGC GTCAGGCACC GATGCCGACC
GATTCGCGGA GGGAAGTGCG CCGTCAGGCC GAGCAACCCC GGCGGGTGCC GCGGGAAATG
GCGCCGCGGG GAGACCGGGA ACGGGACCGT ATCGCCTCGC TGCCTCCCGT TGCGAAACCA
ATACCGTCAC GGCCTGCAGT TCCCTATCAG GCCGCGCCGC AGCCCCGTCG GGGCGAGGGA
GTGGGGCCGT CGGCCACAAA CGGCAGGACA GGGGAGATTC CGGTGCGGGA GGCCCCCCGA
GGCGGGGGCA TTCTCAAACC ACGCGCGTCG GCGGAAGCGC CTGAACTGGC CCAGCTCATG
CCGAGCGCCC AGAGACTTGC GAAGATCGAG GAAAGTTACC GGAAGAAGTA CCGGGATGAT
GTGGCGGACG GGGATACGAA GTTTCTCGAT ACCGACGATA TTCAGTTCGG CTCGTTCCTG
CGCCGGTTCG AGAACGCAAT CTACGGGGTA TGGCGTTATC CCCAGGAAGC GGCCCGGCTC
GGCATTGAGG GAGTTACGCC TGTAAAAATC ACCTTCAACA GGAGTGGTGT CATCGTAAAG
TATGAAATTC TGCAGAGTTC GGGGAGCAGA ATCCTGGATG ACGAGGTGCT GCGGACCCTG
CGCATGGTGG GACCGGTCGG CCCCTTTCCC AGGGGGTACG ACCGGGACGA GTTCCACCTC
ATCGCCTTTT TCCAGTACGG CATCGTTCGG GGAGCGAGCA GATCCCTCCG CTGA
|
|---|
| Protein sequence | MPDKYVEKSF LYLVALSLLL HVGLFALIIL YPQAKPVLRQ EPIMIDLEDI PDLRQAPMPT
DSRREVRRQA EQPRRVPREM APRGDRERDR IASLPPVAKP IPSRPAVPYQ AAPQPRRGEG
VGPSATNGRT GEIPVREAPR GGGILKPRAS AEAPELAQLM PSAQRLAKIE ESYRKKYRDD
VADGDTKFLD TDDIQFGSFL RRFENAIYGV WRYPQEAARL GIEGVTPVKI TFNRSGVIVK
YEILQSSGSR ILDDEVLRTL RMVGPVGPFP RGYDRDEFHL IAFFQYGIVR GASRSLR
|
|---|
| |