| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Gmet_0854 |
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| Symbol | secD |
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| ID | 3738731 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Geobacter metallireducens GS-15 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007517 |
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| Strand | + |
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| Start bp | 940320 |
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| End bp | 941921 |
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| Gene Length | 1602 bp |
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| Protein Length | 533 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 637778132 |
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| Product | preprotein translocase subunit SecD |
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| Protein accession | YP_383821 |
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| Protein GI | 78222074 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0342] Preprotein translocase subunit SecD |
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| TIGRFAM ID | [TIGR00916] protein-export membrane protein, SecD/SecF family
[TIGR01129] protein-export membrane protein SecD |
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Plasmid Coverage information |
| Num covering plasmid clones | 53 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 68 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCAAAGG GGCTTACCTG GCGCTTTGGC CTTATCCTGC TGTTCATTTT TCTGTCGGGT
ATCTACCTGA CCCCGACCTT TGTGTCTCCC CTTCCGTCGT GGTGGAAAGG GCTTCTTCCC
AAGGACCGGA TCAACCTGGG GCTTGACCTT CAGGGGGGGA CACACCTGGT GATGGAGGTG
GAGATCCAGA AGGCGGTGGA GGGCGCCCTC GACCTCATCG CGAGCGATCT GGAAGACAGC
CTTTCCGCCA AGACCATCCG GTTCAAGAAG ATCGGGCGGA TCGCATCGGA TCGGATCCAG
CTCACGTTCT ACGACCGGGG CACCGCCGAC ACGGTGCAGA AGATGGTCAA GGAGAAATAT
CCGACCCTGG AGCTCGTCCC TCCCTATGAC GAGGGGGGAT TCGTCAGCAT GCAGCTCCGC
ATGGGTGAGA AGGAAGCCCA GGAGCGCAAG GACCGGGCCG TTGCCCAGGC ACTTGAGACG
ATCCGCAACC GGATAGACCA GTTCGGCGTT TCCGAGCCGG TCATTGCCCG GGAAGGGCTC
ACCCATATCG TGGTCCAGCT TCCGGGCATA AAAGACCCGA AGCGGGCCAT CGAGCTCATC
GGCCGGACGG CCCGGCTGGA GTTCAAGCTG GTTGACGAGA CGGTCAATCC GGCCACGGCA
ACTCCCGGCA CCATCCCCGA AGACTCCGAG CTCCTCATGG AGAAGAAGAC CGACCCCACC
ACCGGCGCCG TAACCGAAAT ACCCCTGGTG GTCAAGAAAA AGGCGATGAT TACCGGTGAT
CTCCTCACCA ACGCCCAGGT CCGGATCGAT TCCCAGTTCA ACCAGCCCTA CGTGGCGATC
GAGTTCAACT CCACCGGCGC CCGCCTCTTC GACCAGGTAA CCGCCGCCAA CGTGGGGAAA
CGTTTCGCCA TTGTGCTCGA TAACAATATC TACTCCGCGC CGGTGATCCG GGAGCGGATT
TCGGGTGGCA GCGCCCAAAT CTCCGGCTCG TTCTCCGAGA AAGAGGCCGC TGACCTGGCC
ATCGTACTCC GGGCGGGATC TCTCCCCGCA CCGGTCAAGG TGATCCAGAA CGAGACGGTT
GGTCCTTCCC TGGGGCAGGA CTCCATCACC AAGGGGCTGA TGGCCGGTCT CGTGGGGGTG
GCGCTCGTCG TTGTCTTCAT GGCGATATAC TATAAGCTCG CCGGCCTGGT GGCCAACTTC
GGCATGGTGC TCAACGTGCT CTACCTCATG GGCGCCCTGG CGGCCCTAGG AGCGACCCTG
ACCCTGCCGG GCATCGCCGC CATCGTCCTG CTGATCGGCA TGTCCGTTGA CTCCAACGTC
CTCATCTTCG AACGGATCCG GGAGGAGATG CGGCTCGGCA AACCTCCCAA AGCGGCATTG
GATGCCGGCT ATGACAAGGC GTTCCTGACC ATCATGGACT CCCACGTGAC GACGCTCATC
ACGGCCGCCG TCCTCTTCCA GTTCGGCACC GGACCGGTCA AGGGATTTGC CGTGTCGTTG
AGCCTGGGGA TTATCATCAA CCTGTTCACC GCTCTCGTGG GCACCAAGTC AATTTTCGAC
TTCGCCCTTT CGCGCCTGCG GATCAAGCGT CTGAGCATCT AG
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| Protein sequence | MSKGLTWRFG LILLFIFLSG IYLTPTFVSP LPSWWKGLLP KDRINLGLDL QGGTHLVMEV
EIQKAVEGAL DLIASDLEDS LSAKTIRFKK IGRIASDRIQ LTFYDRGTAD TVQKMVKEKY
PTLELVPPYD EGGFVSMQLR MGEKEAQERK DRAVAQALET IRNRIDQFGV SEPVIAREGL
THIVVQLPGI KDPKRAIELI GRTARLEFKL VDETVNPATA TPGTIPEDSE LLMEKKTDPT
TGAVTEIPLV VKKKAMITGD LLTNAQVRID SQFNQPYVAI EFNSTGARLF DQVTAANVGK
RFAIVLDNNI YSAPVIRERI SGGSAQISGS FSEKEAADLA IVLRAGSLPA PVKVIQNETV
GPSLGQDSIT KGLMAGLVGV ALVVVFMAIY YKLAGLVANF GMVLNVLYLM GALAALGATL
TLPGIAAIVL LIGMSVDSNV LIFERIREEM RLGKPPKAAL DAGYDKAFLT IMDSHVTTLI
TAAVLFQFGT GPVKGFAVSL SLGIIINLFT ALVGTKSIFD FALSRLRIKR LSI
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