| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Syncc9605_0001 |
|---|
| Symbol | |
|---|
| ID | 3735739 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Synechococcus sp. CC9605 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007516 |
|---|
| Strand | + |
|---|
| Start bp | 231 |
|---|
| End bp | 1388 |
|---|
| Gene Length | 1158 bp |
|---|
| Protein Length | 385 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 637774584 |
|---|
| Product | DNA polymerase III subunit beta |
|---|
| Protein accession | YP_380338 |
|---|
| Protein GI | 78211559 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0592] DNA polymerase sliding clamp subunit (PCNA homolog) |
|---|
| TIGRFAM ID | [TIGR00663] DNA polymerase III, beta subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 0.392011 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGGTGG TCTGTTCACA GTCCGAACTG AATGGCGCTC TGCAATTGGT GAGCCGTGCG
GTCGCCACAC GCCCCACACA CCCGGTTCTG GCCAATGTGT TGCTGACCGC CGATGCCGGC
AGCAATCGCC TCAGCCTCAC CGGTTTTGAC CTGAGTCTGG GAATTCAGAC ATCTCTCGCC
GCCAGTGTGG AAATCAGCGG TGCCATCACA CTTCCGGCTC GGCTGCTGGG AGAGATCGTG
TCCCGCTTGT CCAGCGATTC TCCAGTCACT CTCGCCGTCG ATGATTCCGG TGAGCAGGTT
CAGCTGACCA GCCTCAGCGG CAGTTATCAG ATGCGCGGCA TGAGCGCCGA CGACTATCCC
GATCTTCCGA TGGTGGAGAG TGGCATGACG CTCAAGCTGC AACCGGAACG GTTGGTGCAG
GCGCTCAAAG GCACCCTGTT TGCCAGCAGT GCTGATGAAG CGAAGCAACT GCTCACAGGC
GTGCATCTCA AGTTCAACCA GCGGGCTCTG GAAGCGGCTG CCACCGATGG TCACCGCCTT
GCTGTGCTCA ATGTTGAGGA TGCCCTGCAG GATGAGGCCG TCACCGACGC CGTTGATGAC
GACGGTTTCG CGGTGACACT CCCATCGCGC TCGCTGCGGG AGGTGGAGCG GCTGATGGCG
TCCTGGCGGT CCGATGAACC GGTCAGTTTG TTCTGTGATC GCGGCCAGGT GGTGTTTCTT
GCGGCCGACC AGATGGTCAC CAGTCGCACC TTGGAAGGCA CCTATCCCAA TTACGGCCAG
CTGATCCCTG ACGGCTTCGC CCGCACCTTT GGAATGGACC GTCGTGCCTT GATCGCCGCT
TTGGAGCGGA TTGCTGTGCT TGCTGATCAA CACAACAACG TTGTGAAGTT CAGCAGTCAG
CCTGAGGACG GTGTTGTTCA GATCAGCGCC GATGCGCAGG ATGTGGGCAG TGGTTCCGAG
TCGCTTCCCG CCAACTTGGA GGGTGACGCC ATGCAGATTG CCTTCAACGT TCGCTATCTG
CTGGATGGCC TCAAAGCCAT GGGCTCTGAT CGAATTGTTC TGCACTGCAA TGCCCCCACC
ACGCCAGCCG TGCTCCGTTC CGATGACGCG TCCGAAGCCT TCACCTATTT GGTGATGCCC
GTTCAGATCC GTTCCTGA
|
|---|
| Protein sequence | MKVVCSQSEL NGALQLVSRA VATRPTHPVL ANVLLTADAG SNRLSLTGFD LSLGIQTSLA
ASVEISGAIT LPARLLGEIV SRLSSDSPVT LAVDDSGEQV QLTSLSGSYQ MRGMSADDYP
DLPMVESGMT LKLQPERLVQ ALKGTLFASS ADEAKQLLTG VHLKFNQRAL EAAATDGHRL
AVLNVEDALQ DEAVTDAVDD DGFAVTLPSR SLREVERLMA SWRSDEPVSL FCDRGQVVFL
AADQMVTSRT LEGTYPNYGQ LIPDGFARTF GMDRRALIAA LERIAVLADQ HNNVVKFSSQ
PEDGVVQISA DAQDVGSGSE SLPANLEGDA MQIAFNVRYL LDGLKAMGSD RIVLHCNAPT
TPAVLRSDDA SEAFTYLVMP VQIRS
|
|---|
| |