Gene Cag_1560 details

Gene Information

• Locus tag: Cag_1560
• ID: 3746560
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Chlorobium chlorochromatii CaD3
• Kingdom: Bacteria
• Replicon accession: NC_007514
• Strand: +
• Start bp: 2041236
• End bp: 2046752
• Gene Length: 5517 bp
• Protein Length: 1838 aa
• Translation table: 11
• GC content: 47%
• IMG OID: 637774100
• Product: VCBS
• Protein accession: YP_379858
• Protein GI: 78189520
• TIGRFAM ID: [TIGR01965] VCBS repeat

Plasmid Coverage information

• Num covering plasmid clones: 0
• Plasmid unclonability p-value: 0.431864
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCGTTGTC ATCTACAATC CATAAAAAAA TTTCCTACCT TAACACTATA CAACCTCCAC 
GCCTTTTTCC ACATTAATTT TTTAACGATT ATGGCTATCA ATACCCCATC TTCGCTTGTG 
CGTCGTGAAT TGTTCATTTT CGATGCTTCT GTTTCCAACG TTGCAACGCT TGCTTCTGCA 
TTACCTGCTA ACAGCGACTA TTTCGTGCTT GATTCCACGC GCGATGGTTT GGGACAAATG 
GCTGATGTGC TTGCGGGGCA AACGGATATT GATGCACTCC ACATCTTCAG CCATGGGAGT 
GCGGGCTTGT TGCGGCTTGG GAACTCCTCG CTTTCGCTTG CAAACCTGAA TAACTACGAA 
TTGCCGCTGT CGCAAATTGG TTCATCGTTG TCGCCATCGA GCGACATTTT GCTTTATGGA 
TGCAATGTTG GTGCGGGCGA TGATGGGCAG CAGTTTGTGG CAACGCTTGC AGAGCTTACG 
GGCGCTGATG TGGCGGCTTC GGCTGATGTG ACGGGAAGCG CAGCGCTTGG TGGGGATTGG 
GAGTTAGAGG TGGAGAGTGG CGTGGTGGAG AATGAGCCGA TGGCGGTTGC AGGATTTGAG 
GGGGTATTGG CGAACAGCAT CCCGACAATA TCTGCTCCCC TTGCGACAAC GGTTGCAGCA 
GGAGATTCGC CTGTCAGCCT GAACCTGCTG GCGAATGCCC ATGACGATGA CCTCACCGAC 
ACGCTCTCGG TAGGAAATGT CAGCTATACC GTTAATGGTG TGCCATCTGC TTTGCCAGCG 
GGAATCACGA TGAACGGCAA TGCACTCACC ATTGATTCCG CCAATACTGC CTATAATGGA 
ATGGCACAGG GTGAACAGAA AACGATCGTT GTTACCTACA AGCTTCTTGA TAGTTATGCT 
AATGCAGAAA TATCTTTTGC CACGAAAGTT GACTACGCTG TGGGATCTGG GCCAGTAGGC 
ACAACAAGTG CGGATGTGAA CGGTGACGGC GAGCTTGACC TGATTGTTGC TAATTTTCAA 
AGCGATACTG TATCGGTTCT GAAAAACAAT GGCGATGGCA TCTTCGCCAC GAAAGTGGAC 
TACCCGACGG GATCTTGTCC ACAGTCAGTC ACAAGTTCGG ACGTGAACGG CGATGGGAAG 
CTTGACCTGA TTGCTACTAA TTGGGGCAGC GATACGGTAT CGGTGCTAGA AAACAATGGC 
GAGGGCACCT TTGCCACAAA AGTCGACTAC GCGACGGGAT ATTCGCCATG GCCAGTCACA 
AGTGCAGATG TGAACGGCGA TGGGAAGTTT GACCTGATTG TTGCTAATTT TTACAGCAAC 
ACAGTATCGG TGCTGAAAAA CAATGGCGAT GGCACCTTCG TCACGAAAGT GGACTACCCG 
ACGGGATTAT CTCCACTTTC AGTAACGAGT GCGGATGTGA ACGGCGACAG CGAGCTTGAC 
CTGATTGTTG CTAATATGTA CAGCGATACG ATATCGGTGC TGAACAACAA TGGCGATGGA 
ACCTTTGCCA CGCAAGTGGA CTACCCGACG GGCTCTTTTC CATATTCAGT GACAAGTTCG 
GACGTGAACG GCGATGGGAA GCTTGACCTG ATAGTTGTTA ATTATTACAG CAATACGGTA 
TCGGTGCTGA ACAACAATGG CGATGGAACC TTTGCCACGC AAGTGGACTA CCCGACGGGA 
ACTTGGCCAT CGTCAGTGAC GAGTGCGGAT GTTAATGGCG ACGGCAAGCT TGACTTGATT 
GTTGCTAATG CACAAAGCAT GGTGTCGGTT CTGAAAAACA ATGGCGATGG AACCTTTGCC 
ACGAAAGTGG ACTACCCGAC GGGATTATCT CCATATTCAG TGACGAGTTC GGATGTGAAC 
GGCGACGGTA AGCCAGACCT GATTATTGCT AATCGGGACA GTGCTACGGT ATCAGTGCTG 
ATCAACAATT CGACCGGCTT CAGCAGCGTT TACCCAACCA CCACGGCAAC GATAACAATT 
ACTGGCGCCA ACGACGCACC CATAGTGGAC GTAACAGATG TGATCGGCAC AGTGACCAAA 
CCGGTGCCCC CGATTGGCAA TTTGACTGAC AGTGGTACGA TACACTTTAC GGATGTTGAC 
CTTTCTGATA GTCACAGTAT CAGCAGCGTT ACGCCATCAG CCGGGGTACT TGGAACGCTG 
ACATCAACGA TTACGGCTGA TACGACAGGC ACTGGGCTGG GCGGAGCTAT AACTTGGCAC 
TACAGTGTTG CTGCCTCTGC GGTTGAATAC CTTGCCGAGG GTGAGCACAA GGTCGAGACC 
TTCACATTCA GCCTTCTTGA TGGTCACGGC GGCAGTGTCG AGCGCACGGT TGGGGTTACC 
ATTACGAGCC CCAATGCTGA TACCATTCTC CCCACCCTAA GCAACAGCAC GCCCGCTGAC 
GCAGCCACTG CCGTAGCCGT TGATAGCAAC ATCACGCTAA CCTTCAGCGA AAACGTGCAA 
GCCAGCACGG GCAACATCGT CATCACCAAC GGCAGCGATA CGCGCACGAT TGATGTAACC 
GATAATACAC AAGTAACGTT TAGCGGCAAC ACGGTTACCA TCAATCCAAC CGCTGACTTA 
CAAGCAGGAC ATCACTACCA CGTTGAAATG GCAAACGGTG CAATTACCGA TGAAGCAGGA 
AATGCGTTTG CTGGCATTAG CGATGTAACT GCGTTGGATT TTACAACAAA AGGCAATGTG 
GCTCCGCATA TCTTCGCGCC TGTCTCGTTG TCGTTTGCCG ATAAAATTGA TTATGTCACA 
GGTGCTCAAC CCAATTCAGT AACCGCTGCT GACATTAATA GTGATGGTAA TGTTGATCTT 
ATTGTTGCGA ATTGGGGTGG CAATACTGTG TCAGTATTGA ACAATAATGG AGATGGTACT 
TTTGCCAATA AAGTTGATTA TACAACGGGT TCTGGGGTGA TTTCCGTTAC AAATGCTGAT 
GTTGATGGAG ATGGTTCTGT TGATTTGATC TTTGCAAATT CAATCAGTAA CACGATATCA 
GTATTGAAAA ATAATGGTGA TGGGATATTT TCTCCCAAAG TTGATTACTC CGTAGGTAAA 
AATCCTTGGT CAATCATTAG TACAGACATA GACAATGACG GTATGCCTGA TCTGATAGTC 
GGGACTAATG GACATGATAT GCCATGGGAT ATGGGATTGG CTCAAATATG CAACGCTATA 
TCGGTGTTTA AAAATAACGG TGATGGTTCG TTTGCCAGTA AAGTTGATTA TGCAATAGAG 
AATGCTTTTT TTTCTGTTGC CAGTGCTGAT GTAAATGGCG ATGGTCAAAC CGATTTAATT 
GGCGCAAACT GGACTACAGG TGGTTTATCC ATTTTGCAAA ACAATGGAGA TGGATCATTT 
GCCAGTAAAG TTGATTATGC AATACCGAAT TCGTTTTATT CTGTTGCCAG TACAGATCTA 
AATAGCGATG GTAAACCAGA TATATTTGGT TCAAACTTGG CTGTAAACGG AGTCTCCATT 
TTACAAAACA ATGGCGATGG TACTTTTGCC AGTAAAGTTG ATTATGCAAC AGGCAGTAAT 
CCATGGATTG TTAATAGTTG CGATATCAAT GGTGATGGGT TTTCAGATAT AAGTGTTGTT 
AATACGGGAA GCAATACTGT ATCTGTTTTG ATAAATAAAG GAGACGGAAC TTTTCTTGAT 
AAAAAAGATT ATTCAACAGG AAATATGCCT TTTGGGCTCA GTAGCGCCGA CTTAAATAAA 
GATGGAAAGT CAGATTTAAT AGTCGTAAAT AGTAGTGATA GCAATACCGT ATCTGTATTT 
CTCAACTCCA CATCGTCAGT GCTAACCCAT TTCACCGAGC AAACTCCTGT TGCCGTCTGC 
AGCGACATCA GCAGCAGCGA TCCAGATGGA GATGCAAGTT GGAATGGTGG CGCACTGACC 
ATTCAGGTTA CAGCCAACGC TGAAGCAACA GATACCCTCA GCATTGCAAC AACTAATCCC 
GGCGGCAATG GTGTCTGGCT GGATACCACT ATTGGCTACA AGCTGATGGC CGGAACAACT 
GAAATCGGCT CGGCAAATGC TGCATTGGTA AGCAACGGCT CTACATTAAG CTTCAGTTTC 
AACGCCAATT CAACCAATGC CATGGTGCAG GATGTTGCTC GGTCGGTGAC GTTCAACAAT 
AGCAGCGATA CACCTTCAGA GCTTGAGCGA ACAGTAACGT TCACGGTAAC CGACAATTTC 
GGTGCATCAG CCTCAGTAGA GCAAATTATC ACAGTTACGG CAGTTAACGA TCCTATTGAT 
TCAATTTCAC CCGTTCTCAC CTCATCTACC CCATCCGACA ACACTACAGG AGTAGCAGTT 
AGCAGCAACA TTACGCTCAC ATTCAGTGAA AACGTCCATG CCGGAACGGG TAACATCACC 
ATTACGGATG GCACAGATAC ACATACGATT GCGGTTGCCA ATACGACACA AATCACATTC 
AACGGTAAAA CTGTTATCAT CAACCCAACT AAGAATTTAC AAGAAGGACA TCACTATCAC 
GTTGAAGTAG CAAACGGTGC AATCAAAGAT TTAGCAGGAA ATGCGTTTGC TGGTATTAAC 
GATGCAACAA CGTTGAATTT TACAACAGTA AAAAGCGACT CCGATCATCA TGATCTCACC 
GGCACCATCA CCTTCTGGAA AACCGGTCAA GCGCTAAGCG ATGTTCATGT AAATCTGATG 
CCAACAGCAA GCACAGGCAC GGCTCATCTT ATCGACTTTA GAAACATTGA ACTCCATGCA 
GATGGTAGCC GTACCGTTGA AATATGGAAA ACAGCTACAC CAACCGAAGC TGAAAACGTT 
GATTTTGAAC TTGAACTGCA AGCAGGTTCA ACAGCTACGT GGCAATCAAT GTTACCTAAT 
GGATGGCTTT CTGCCGATGG CGCTGATGGC AACCTCTTTT CAGTGCAAGC TGCGGGGCTT 
AATGCTCCAC TTTCAGCAAA TGCCGTACAA CTTGGCGTGC TCACCCTTAC GCAACCAACC 
GACACGCAAA CATTTAGCTT AAGCCTTGTT GATGGCATTG TTGGCACCCA AGAAGCCACA 
CCATTTACCC TCCATTCCGA GCAAACTATT AGCGATGCAG CCGGCAATTA CTTCTTTACC 
AATCTGCAAG AGAGTAACTA CACGATCAGT GCCAATAAGG AGTATAATAC ACTGCACAAC 
GCAGTTACTT CCGCCGATGC ACTTGCAGCG CTTAAAATAG CCGTTGGACT TACCCCAAAT 
GAGGATGGTA GTGCAATTCT TCCATACCAA TATTTAGCGG CTGATGTAAC CCACGACGGT 
CGAGTACGCT CAACCGATGC ACTTACTATT TTAAAAATGG CTGTTGGTTA TGAAGGTGCT 
CCAGAAAATG CGTGGATTTT TGTAGCTGAA GAAGATGTTC TTGCAACCTC CATGAGCCGT 
AAAGCCGTTG ACTGGTCTAT AGAAAAAATT GATGTTCCGC TTGAAAACGA CACACAGGTT 
GACCTCATCG GCATTGTTAA AGGCGACATT GATGGCAGTT GGGGAATGGT AGGGTGA 

 

Protein sequence

MRCHLQSIKK FPTLTLYNLH AFFHINFLTI MAINTPSSLV RRELFIFDAS VSNVATLASA 
LPANSDYFVL DSTRDGLGQM ADVLAGQTDI DALHIFSHGS AGLLRLGNSS LSLANLNNYE 
LPLSQIGSSL SPSSDILLYG CNVGAGDDGQ QFVATLAELT GADVAASADV TGSAALGGDW 
ELEVESGVVE NEPMAVAGFE GVLANSIPTI SAPLATTVAA GDSPVSLNLL ANAHDDDLTD 
TLSVGNVSYT VNGVPSALPA GITMNGNALT IDSANTAYNG MAQGEQKTIV VTYKLLDSYA 
NAEISFATKV DYAVGSGPVG TTSADVNGDG ELDLIVANFQ SDTVSVLKNN GDGIFATKVD 
YPTGSCPQSV TSSDVNGDGK LDLIATNWGS DTVSVLENNG EGTFATKVDY ATGYSPWPVT 
SADVNGDGKF DLIVANFYSN TVSVLKNNGD GTFVTKVDYP TGLSPLSVTS ADVNGDSELD 
LIVANMYSDT ISVLNNNGDG TFATQVDYPT GSFPYSVTSS DVNGDGKLDL IVVNYYSNTV 
SVLNNNGDGT FATQVDYPTG TWPSSVTSAD VNGDGKLDLI VANAQSMVSV LKNNGDGTFA 
TKVDYPTGLS PYSVTSSDVN GDGKPDLIIA NRDSATVSVL INNSTGFSSV YPTTTATITI 
TGANDAPIVD VTDVIGTVTK PVPPIGNLTD SGTIHFTDVD LSDSHSISSV TPSAGVLGTL 
TSTITADTTG TGLGGAITWH YSVAASAVEY LAEGEHKVET FTFSLLDGHG GSVERTVGVT 
ITSPNADTIL PTLSNSTPAD AATAVAVDSN ITLTFSENVQ ASTGNIVITN GSDTRTIDVT 
DNTQVTFSGN TVTINPTADL QAGHHYHVEM ANGAITDEAG NAFAGISDVT ALDFTTKGNV 
APHIFAPVSL SFADKIDYVT GAQPNSVTAA DINSDGNVDL IVANWGGNTV SVLNNNGDGT 
FANKVDYTTG SGVISVTNAD VDGDGSVDLI FANSISNTIS VLKNNGDGIF SPKVDYSVGK 
NPWSIISTDI DNDGMPDLIV GTNGHDMPWD MGLAQICNAI SVFKNNGDGS FASKVDYAIE 
NAFFSVASAD VNGDGQTDLI GANWTTGGLS ILQNNGDGSF ASKVDYAIPN SFYSVASTDL 
NSDGKPDIFG SNLAVNGVSI LQNNGDGTFA SKVDYATGSN PWIVNSCDIN GDGFSDISVV 
NTGSNTVSVL INKGDGTFLD KKDYSTGNMP FGLSSADLNK DGKSDLIVVN SSDSNTVSVF 
LNSTSSVLTH FTEQTPVAVC SDISSSDPDG DASWNGGALT IQVTANAEAT DTLSIATTNP 
GGNGVWLDTT IGYKLMAGTT EIGSANAALV SNGSTLSFSF NANSTNAMVQ DVARSVTFNN 
SSDTPSELER TVTFTVTDNF GASASVEQII TVTAVNDPID SISPVLTSST PSDNTTGVAV 
SSNITLTFSE NVHAGTGNIT ITDGTDTHTI AVANTTQITF NGKTVIINPT KNLQEGHHYH 
VEVANGAIKD LAGNAFAGIN DATTLNFTTV KSDSDHHDLT GTITFWKTGQ ALSDVHVNLM 
PTASTGTAHL IDFRNIELHA DGSRTVEIWK TATPTEAENV DFELELQAGS TATWQSMLPN 
GWLSADGADG NLFSVQAAGL NAPLSANAVQ LGVLTLTQPT DTQTFSLSLV DGIVGTQEAT 
PFTLHSEQTI SDAAGNYFFT NLQESNYTIS ANKEYNTLHN AVTSADALAA LKIAVGLTPN 
EDGSAILPYQ YLAADVTHDG RVRSTDALTI LKMAVGYEGA PENAWIFVAE EDVLATSMSR 
KAVDWSIEKI DVPLENDTQV DLIGIVKGDI DGSWGMVG