Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Cag_1345 |
Symbol | |
ID | 3746860 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Chlorobium chlorochromatii CaD3 |
Kingdom | Bacteria |
Replicon accession | NC_007514 |
Strand | + |
Start bp | 1813138 |
End bp | 1814001 |
Gene Length | 864 bp |
Protein Length | 287 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 637773883 |
Product | quinate/shikimate 5-dehydrogenase |
Protein accession | YP_379648 |
Protein GI | 78189310 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0169] Shikimate 5-dehydrogenase |
TIGRFAM ID | [TIGR00507] shikimate 5-dehydrogenase |
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Plasmid Coverage information |
Num covering plasmid clones | 25 |
Plasmid unclonability p-value | 0.786263 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAATAGCT CAACTCGTAT TTTTGCCTTG CTTGGTCGAG CGGTGGATTA CTCGTATTCA CCGCTTATTC ACAACACGGC GTTTCAAGCG CTGGGGTTGC CTTATCACTA CACCATTTTT AATATTGCTG AAGCCGCACT TGTTGGGGAT GCCCTGCGTG GAGCACGGGC ACTTGGGTTG GGCGGCTTTA GCGTTACCAT TCCCTACAAG CAAACCGTTG TTCCTTTTTT AGATGAGCTT TCAGAAGAGG CAACAACCAT TCAAGCTGTT AACTGTATTG TTAATAAGAA CGGTAAGCTA ATTGGCTACA ACACCGATAT TCTTGGTTTT GCCTCTCCTT TGTTTGCTTA TCGCGAAGCG TTGCATGGCG CTACCATTGC GCTATTTGGC AGTGGTGGTG CAGCACTTGC GGCAATTGAG GCGTTCCAGC GCTACTTTAC CCCTAAGCAA GTGTTGCTTT TTGCACGCGA CAGCCAAAAA GCTAAAAGCC AACTTCGTAG CTCGTTGGCA CTTGAACGTT ATACCAACCT TGCCATTGTA CCACTTTCGG ATTACGAGCG CGTGCGTGAG TGCCGTTTGG TGATTAATGC CACCCCATTA GGCACCAAAG GGCGAGCTGA CGGGAGCGCC ATTATTCCCC TTGAGAGTAA CTTGCTGCAT AGTGAGCACA TTGTGTATGA TATGGTTTAT AATCCAACCA TAACGCCCTT GTTGCAAGCG GCACAAGCGG TTGGTGCCTC CACCATTTTT GGTATTGAAA TGCTGATTGG GCAAGCAGAG CAAGCCTTTA CCCTTTGGAC AGGAGAGAAA ATGCCAACAG AGTTAGTTCG CCAAACCGTG ATGGCAAAAC TTCAAGAATT ATAG
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Protein sequence | MNSSTRIFAL LGRAVDYSYS PLIHNTAFQA LGLPYHYTIF NIAEAALVGD ALRGARALGL GGFSVTIPYK QTVVPFLDEL SEEATTIQAV NCIVNKNGKL IGYNTDILGF ASPLFAYREA LHGATIALFG SGGAALAAIE AFQRYFTPKQ VLLFARDSQK AKSQLRSSLA LERYTNLAIV PLSDYERVRE CRLVINATPL GTKGRADGSA IIPLESNLLH SEHIVYDMVY NPTITPLLQA AQAVGASTIF GIEMLIGQAE QAFTLWTGEK MPTELVRQTV MAKLQEL
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