Gene Cag_1239 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCag_1239 
Symbol 
ID3748272 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChlorobium chlorochromatii CaD3 
KingdomBacteria 
Replicon accessionNC_007514 
Strand
Start bp1645671 
End bp1653056 
Gene Length7386 bp 
Protein Length2461 aa 
Translation table11 
GC content42% 
IMG OID637773772 
ProductVCBS 
Protein accessionYP_379543 
Protein GI78189205 
COG category 
COG ID 
TIGRFAM ID[TIGR01965] VCBS repeat 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTCTAATA CCGTAGTTTT TATTGACAGT CGCATTAGCG ATGTTAATGC GCTTATTTCG 
CGCTTTGCAG TTGGTACTGA GTATTATGTG CTTGATAGTG AGCGCGATGG CATTTTGCAA
ATTACGGAGG CGCTTGCCGG TAAAAGCGGC TACAGCTCTC TGCAAATTTT TTCGCATGGA
ACGGCTGGCT CTTTAATGCT TGGCAGCACG GTGCTCAATA ACGCAGCGCT TAGCAATTAT
ACGGCGCAGT TAGCGGCTAT TGGTGGTGCG TTAACGGCAA GTGGTGATAT TTTATTGTAT
GGATGTAATG TTGCGGCTGG TGATGTTGGG CAGCAGTTTA TTGCGGCGTT GGCTGAGGCT
ACGGGTGCTG ATGTTGCGGC TTCGGATGAT TTGACGGGTT CGGCGGCGCT TGGTGGCGAT
TGGGATTTGG AGTATGCAAC GGGTGCTATT GAGAGCGGTG TTGATACGAA TGTGGTGCAA
GAATATGATG GGGTGCTGGA ACCACCAACT ACCACAATTA CTATCACATT GCCAACGGAA
GCTGAGATTA GAAATAATTC AAATATAGAT CAAGGCTATA TTACGGAAAG CACGCTTGGC
TCCAATGTTA CATTGTATTT GCAAGATATT CTTGCTGTTG ATACTACTAA TTTATTGAGT
ACAACAGCAC CTACCTCCTT TGTTATTTCT GTAAGTTATG GTAAAATATC ATTCCTTAAA
ACTAAGGTTG ATACTATTCC AATAGTTTCT GGAAATGGCT CAAATACAGT AACGCTTACT
GGTACAATTA CCCAAATTCG GACGTTATTA ACGAATAATA CGATTTCATA TGTTGGGAAT
ACGGGCTTTT CTGGTATTGA AACATTATCA GCAGGTATCA GTGGTGTACT TGCAAATAAT
AGTGGTAATG CGTCGGGAAG TGCTAATAGT GAATTGAGTA TTGTTGGTAT TAACGATGCA
CCGACTATTC TTGATGCTAA GGCTACTTTG ACGGTATCAG AAGGAAGTTT GCTTAATGAT
GTTTTTGAGG GAAGTTTTAC TCTTTCAGAT CCTGATATTG CTCATTATAT CATGCAAGCT
GACATAACGG TATTGCACGG TACGTTAAAA CTATCAGGAG ATGATTTAGA TTCTGTTACA
GGTAATGAAA CAAAATCTGT TACCATAACA GGTTCTCGCG CTAATATTGA GCTTGCAATA
ACAGCGTTAC AATATACTCC TGATGAAAAT TATAATGGAA GTGATACGTT AACAGTAACG
GTTAATGACC TTGGAACAAC TAACGTTAAT CAAGGTAATC CTGATGAAGA TAAAACTGAT
ATTCATCAAG TTACCATTAG TGTTGTGAAC CATGCTCCAG TTTTGGAAAA CGATTATACT
CCGATCTTGA GTGAGATTTC AGAAGATATT AATAGTAGTA TAACGGAAAC GGAAGATGGG
GATAACGCTG GTACTCTTGT AAAGGATATT ATTCCTGAAA ACGATCCTAC TGATTCAATT
ACGCTTGATG CAATTACCGA TGAAGATGTA ACTTCCGCAT TACAATCAAT TTACATTACG
GCTGTAGATT CAACCAATGG AAAGTGGCAA TTCAAGCTTG ATGGTCAAAC TACTTGGTCA
ACAATAACAC TAACGGGCGA TACCGCATTA TTGTTAAGCG AAAACAATAG TCTGCGCTTT
ATTCCTAACA ATAACTGGAG CGGTACAGCA ACCTTTACGT TTGGCGCATG GGATGGAACA
GGACGTGATA TAAACAATAA TAATGCCTTA TATGAAGCTG GAGATTATGT AGTTATTACG
CAGCGAGGTG TGTTGAATGC TCCATTTTCT CTTGATGTTG ACACCGCTAC AATTACCGTT
AATCCGGTAA ATGATGCTCC TACCTTTACA GCATTTTCAG CTCCAATCAC TCCAGCGATC
ACAACAAACC AGCCAAGTTT AGCTTTAGAA GATGGCGGGA ACACTGTTGG TGAGCCTTCA
ACTACTCCAA TTACCATCAC TTTTGATGAT TTAGCAACAA AAGGTAATGA GGCTGATGCA
AACGATGCGG CTTATGGTGG TGCGGTAACT GCGTTTGTGG TAAAAAGAGT GCTTTCAGGT
ACTCTTACTA TTGATAACAC TGACTATACA GCAGGAACGG AAGATTTAAA TCTTACTATT
TCAGAAAGTC AGGATGCCTC TTGGACGCCT GAATTAAATA AAAACGGCAT ACTTAATGCT
TTTACCGTTG TTGCAAAAGA CAATGATACT ACGGATTCAA AAGAATCTAC AACACCATCG
GTAACCGTTA CAATAAACCT TACGCCCGTT AACGATGCGC CAACGGTAAT TCCCGCTACA
CAATCAGCAA CCTTAACGGC AGGTAGTGAT GATGTTACGT CAGCATACAT CTCTATGGCG
ATGTCGGACG TGGACACGGG GGATATTGTT AAAGTTGATG GAGACTGGTT AGCTGATGAA
AGTGCAGCAA ACGACGGAGA AGAGCACTGG ACATCAAGTG ATGGTGGAAA AACTTATACC
TTTGACGGTT CATACGGTAC TGCAACACTT TACCGTGTAG CAACAACTGA TGGACATTCT
GCTGGCGAAG TTACTTACTC ATTTGATTAT GCTGATACCG ATTTAGATTC TTTAGCTGCC
AATGCAACAG CAACTGATAG CTTTACCATT GTGGTATCTG ATGATGCAAA GGTAACAGCA
ACTGCTGATG CTGTCTTTAC CATTAATGGT GCAAACGATG ATCCAATAAT AACAAGCGGT
ACACAATCAG GTTCTGTAAT AGAAAATAGC TCTGAGACCG CGACAGGTGA TGTAAATGCA
ACCGATATAG ATTACGGTAC AACTTTAAGT TATAGTGGTG ATGCTACTGG AGATTACGGA
AGCCTTGATG TAACTGAGAT TGATGGTACT TGGACCTATA CCTTAACCAG CAATGCGCTT
GATGATGGAG AAAGTGATAT AGAATCGTTT ACAATTACCG TATCGGATGG TGATGGAGGT
AGTGCAACTC AAGATGTAAC TATTACGGTA TGGGGCGATA ATGATCCACC TACCATTACT
GAGAGCGCAC AAAGTCCTGA CTACGTTACG GAAGATGGCG GAATTAACAA CGGAACTGCT
GGCACATCCA GTGCTCATAT TGATGTAACA CTTAGCGATG CCGATGGTGG TGATACGGTA
AGCTACGTAA CAACAGGTTG GTCTGGTTCT GGAAATACTT ATACCAAAAC CGGAACCTAT
GGCACTGCAA CGCTGCACCC CAATACGCAT GTTATAGATT ATGTGCTGAA TAACAGCGAT
ACCGACACAC AAGCTCTTGA TACAAACGAT GTAGTTTCTG ATTCATTCTC TATTACCGTT
ACGGACGGCA CTGATTTTAC ATCGGAAACT ATTGCGTTTA CCATTCACGG CACAAATGAT
GCCCCAACTA TTGATGTATC TGATACCGGT GAGAGCTTTA CCGAAAGTGA TGATGCAAGT
ATGCAAACGC TTTCAGCAAC CGGCTCCATT ACCTTTGACG ATGTTGATGC AAGCGATTCG
GTAAGCCTTA CCTTTGCCGA GAGCACCGAT ATTTCATGGT CGGATAGCAA TGGTGGTGGA
GACTATGATA ATGAATTGGA TAGCGATTAT AGTTCTGTAA AAGCAGCGTT GCTTAATGGT
TTTAGCACAA CAGCTACAGG TTGGAGCTAT AGTACAAGCG GAGGTAGTAG TCTTATTGGA
TCGGAGTTTG GTGCTATACC GAGTAATTAT TTTCTACCAC CACCGTTCTC ATTTACTTCA
CTGATTACAG GAGTGCTTGG TGACCAAAAT GATGTAACAG AAGGTCAGTT TAAGTATGAT
GTTTACACTC TCTCCAATGT TGTAAGTGGA ACTTTGGTTT TTGCCGCTAT AGAATCAAGT
GCCTTTCCAG AATACGCAAA TGTTTATACA TCTGCCAATC TTCAGTTGAG ACAGCCCATC
ACTCCAAGAA TAATCAGTAA TACTACAGAC GGTAATGCAC GGATCTTGGC ATGGTTTTAT
CTGCCAGGAG ATACTCTTTG GGTTGGTTCG GATGCACCTC AACAGAGTGG TGCCTACAAT
CTCTACCTTG GAGGTACAAT TGCAGAAAGT GGCGATGGCG TTGACCTCGA CTTCCTTGAT
GAAGACGAGC AACTCACATG GAGCTACACC GTCTCTGCTA CTGACGGCAC AGCTTCCACC
ACCTCAACCG AATCGGTAAG CTTTACCATT ACCGGCGAAA ACGATGCGCC GACCATTAGC
ATTAGCGATG ATTCGGCAAC CATTACAGAA AACAGTGGTT CTGATGTTTC AGACTTGCAA
ACCATTGACG TAAGTGGCGA TATAGAAATT GACGATCCCG ACACGCACGA TGATACCGTA
ACGGTTACCT CTTCGTTGGA TAGCATTTCA TGGAGTGGAG GCGATACCAC AGATAGTGTT
TTTGATACGT TAACCGATGG ATTTACTGCT GATGAAGATG GCTGGAGCTA CTCAGTAACC
GATGGCGTTG ACCTCAACTT TATTGGCGAA GATGAAACCG TTGTGCTCAC CTACAACGTA
ACGGCAAGCG ACGGCACTGA AAGCGATACC GATACCGTAA CCATTACCAT TGAAGGCACC
AACGACACTC CAACCGTGGA TGTTGTAGAA ACCAGTATAA CCTTTGCAGA GGATGATACG
CTAAGTGATA GTGGAACCGT AAGTTTTAGC GATCTCGACA CCAACGATGT CATTGATGTT
ACAGAAAGCT ATAACAATGA TATTGCATGG AGCTATAGTG GAGGTACCTT AACTGATGAA
ATGATTGGTG AGGATATTTC TACGTTAACC AATGGATTTA CTGCATGGGG AGAAGATTTG
TCTTCAGATG AAACAGTATG GAATTATAGC GCAACCCTTG GAACTGATGA CCTCGATTTT
CTTGATGCAG GTGAAACACT CACCTTTAGC TACACCGTAA CCGCTACCGA CAACAACGGT
GCAAGTGCTA CCGATACCAT TACGGTTACT ATTACCGGTT CGAATGATAC ACCTCACTTC
AACCAAGATT CTGTAGATAA CGGTTCAGTA ACAGATACAT CGGCAAGTGA CACATTCTCT
AATGATATTA TTGGTACGCT TACAGCTGAT GATGTTGATC ACAACGATAC CATAACATAT
GGCGTTGTTA ATGGCACTGG AACTTACGGT ACCTTAACCG TGGATTCTTC AACCGGCGTT
TACCGTTATG ACGGTAATGA TAATACTATT AATGCGCTGA ATGCTGGTAC ATGGAGTGAT
ACATTTACCG TTACTGCGAG CGACGGAACA ATAAGTGAAT CAGCTACTGT TGTTATTACC
ATTCATGGAG CAAACGATAA TCCAACGGTA AGCATCAACG ATGATTCTTT AAGCTTTACC
GAAGATGTTA GTGCCTCTGC ACAAGATTTA ACCGATAGTG GTTCTATTAC TTTTGACGAT
GTTGATACAA GCGATAACGT TGATATTATT GCAACGTATA AAAACAATAT CTCATGGAGT
GGAGGTACTT TAGCAAATCA AATGAGTGGT GAGGATAGCG GTAAATTAAC ATCAGGTTTC
CACGCATCAG CAACCGACAG TACCTCTGAT AGTATAACTT GGGACTACAG TGCAACAGAT
GTAGATCTTG ATTTTCTTGC TGAAGATGAA ACCATCACTC TTGGTTTTAC CATAACTGCA
CGCGATAGCC ATAATGCCTT TGCTACTGAT GATGTAACCA TTACCATCAC TGGCACCAAC
GATGATGTTG ATATTACTGG TGGTACTACG AGCGGTTCAG TAACAGAATT GGCTGACAAA
TATAGTGAAA ATGGTGTTCT TGAAAATGAC TATCTCCATT CTATAACTGG TTCTATTGAT
ATCTCTGATC CTGACGTTAA TGATAGCCAT ACAGCCACAT TTACGGATAA TAGTGAATCA
GAACAAGTAA CCTATCTAGG TAGTTTTGAT GTTGCTGATA ATGGAGAAGA TTGGACGTTT
ACCGTAAGCG ATGAGGATTT AGACTATTTA GACGATGATG ATGATCCTCT TATCCAAACT
TATACCATAA CCATCTCTGA CGGGCACGGT TCAAGCGATA CGCAAGATGT TACCATTACC
ATCCACGGTT CTGACGACAA CGCCTCCGTT GCAGGTCGTG TTTACTACTG GAGCAACTTC
GATGACATTG ACGACGTAGC AACCGAAATG TACGCCCAAG ATTCAATGCA CACCGATGGA
GAAGATAGTG GCATTGAGTT TAGAAATATC GAAAAACACG ACAACGGCAC CTACACGCTC
GATATTTACA AAACAGCCGA TACCGATGAG GCTGACAGCT TCCTTATTAA GCTCCAGTTA
GCAAAAGGCA GCGTTGCCAC ATGGGAACAA AGCCACGATC TTTTTGATGG CGAAGGTAAT
GAACTACCGG ATCTTACTGA GTTTGGATTT GTTACCTATG CCAGTTCTCT ACGCACAGGC
GAATGCAATA TCGGAGGTTA TAGCGCATCA CTACTGTCAT TACCGAACGA TCAAGAGGTT
AAGCTTGGCA CGCTTACCAT TACAGCGCCA ATTTTTGATG CGAAACTGCT TTCGGGTAGT
TACATAGGTG ATACTGCAAT TGATGCTGGT GATATCTTCT CAGAAATGAA ACTTAATGTT
ACAGAAGGCG AAGATATTAC TTATTACAAT GGTGATGGAT TGTACGACTA CTTAAACCAA
CTTAATTCAG GTGAAGACTC ATTCTATTAT TATGACTCCG TTGATCCTGA TGACTATAAC
TTTGATGCCA TTAAAGAAGT TACGACTGAA GATGCTAATG AAGTAACTCC AGCAGATGCT
TTATTAGCAT TAAAACTAAG TATGGGAATT AATACTGCAT TACCAGACTT AATTGCCTTA
TTTGAAGAAT CAGACACTAT TCCATTAATA CCATATATGT ATATGGCAGC AGATGTGAAT
AAAGATGGTG AAGTAACAAT TCAAGATGCC TTGAATATCT TAAAAATGTC TGTTAATTAT
GCATGTGCTC CAGAGCAAGA GTGGATATTT TCACCATTAC CGCATAATGA ACAAAACATA
TTGGAAAATA TGATGAATGG TTTTTATGTA ACCTATGTTA ATGATTTAGG TGAAGACGTT
AAGGTGGATT GGCTTGATAT TAAAGGCATA AGTGGAGATG AAACTGGCAT TATTCTCTCT
ATAGGTGATA ATGCGATACC AATTGAGGAA TGGAATATAG GGGTAGATTG GGAGCAGGCA
TCTCCAGAGC TGCATGATAT AACTGTAACT GACAATGACC TACAATTTGT AGATCTTATT
GGCATCCTCA AAGGCGACGT CAACGGCAGT TGGGGCGACC CAATTAATTT TAATCCACCC
AATTAA
 
Protein sequence
MSNTVVFIDS RISDVNALIS RFAVGTEYYV LDSERDGILQ ITEALAGKSG YSSLQIFSHG 
TAGSLMLGST VLNNAALSNY TAQLAAIGGA LTASGDILLY GCNVAAGDVG QQFIAALAEA
TGADVAASDD LTGSAALGGD WDLEYATGAI ESGVDTNVVQ EYDGVLEPPT TTITITLPTE
AEIRNNSNID QGYITESTLG SNVTLYLQDI LAVDTTNLLS TTAPTSFVIS VSYGKISFLK
TKVDTIPIVS GNGSNTVTLT GTITQIRTLL TNNTISYVGN TGFSGIETLS AGISGVLANN
SGNASGSANS ELSIVGINDA PTILDAKATL TVSEGSLLND VFEGSFTLSD PDIAHYIMQA
DITVLHGTLK LSGDDLDSVT GNETKSVTIT GSRANIELAI TALQYTPDEN YNGSDTLTVT
VNDLGTTNVN QGNPDEDKTD IHQVTISVVN HAPVLENDYT PILSEISEDI NSSITETEDG
DNAGTLVKDI IPENDPTDSI TLDAITDEDV TSALQSIYIT AVDSTNGKWQ FKLDGQTTWS
TITLTGDTAL LLSENNSLRF IPNNNWSGTA TFTFGAWDGT GRDINNNNAL YEAGDYVVIT
QRGVLNAPFS LDVDTATITV NPVNDAPTFT AFSAPITPAI TTNQPSLALE DGGNTVGEPS
TTPITITFDD LATKGNEADA NDAAYGGAVT AFVVKRVLSG TLTIDNTDYT AGTEDLNLTI
SESQDASWTP ELNKNGILNA FTVVAKDNDT TDSKESTTPS VTVTINLTPV NDAPTVIPAT
QSATLTAGSD DVTSAYISMA MSDVDTGDIV KVDGDWLADE SAANDGEEHW TSSDGGKTYT
FDGSYGTATL YRVATTDGHS AGEVTYSFDY ADTDLDSLAA NATATDSFTI VVSDDAKVTA
TADAVFTING ANDDPIITSG TQSGSVIENS SETATGDVNA TDIDYGTTLS YSGDATGDYG
SLDVTEIDGT WTYTLTSNAL DDGESDIESF TITVSDGDGG SATQDVTITV WGDNDPPTIT
ESAQSPDYVT EDGGINNGTA GTSSAHIDVT LSDADGGDTV SYVTTGWSGS GNTYTKTGTY
GTATLHPNTH VIDYVLNNSD TDTQALDTND VVSDSFSITV TDGTDFTSET IAFTIHGTND
APTIDVSDTG ESFTESDDAS MQTLSATGSI TFDDVDASDS VSLTFAESTD ISWSDSNGGG
DYDNELDSDY SSVKAALLNG FSTTATGWSY STSGGSSLIG SEFGAIPSNY FLPPPFSFTS
LITGVLGDQN DVTEGQFKYD VYTLSNVVSG TLVFAAIESS AFPEYANVYT SANLQLRQPI
TPRIISNTTD GNARILAWFY LPGDTLWVGS DAPQQSGAYN LYLGGTIAES GDGVDLDFLD
EDEQLTWSYT VSATDGTAST TSTESVSFTI TGENDAPTIS ISDDSATITE NSGSDVSDLQ
TIDVSGDIEI DDPDTHDDTV TVTSSLDSIS WSGGDTTDSV FDTLTDGFTA DEDGWSYSVT
DGVDLNFIGE DETVVLTYNV TASDGTESDT DTVTITIEGT NDTPTVDVVE TSITFAEDDT
LSDSGTVSFS DLDTNDVIDV TESYNNDIAW SYSGGTLTDE MIGEDISTLT NGFTAWGEDL
SSDETVWNYS ATLGTDDLDF LDAGETLTFS YTVTATDNNG ASATDTITVT ITGSNDTPHF
NQDSVDNGSV TDTSASDTFS NDIIGTLTAD DVDHNDTITY GVVNGTGTYG TLTVDSSTGV
YRYDGNDNTI NALNAGTWSD TFTVTASDGT ISESATVVIT IHGANDNPTV SINDDSLSFT
EDVSASAQDL TDSGSITFDD VDTSDNVDII ATYKNNISWS GGTLANQMSG EDSGKLTSGF
HASATDSTSD SITWDYSATD VDLDFLAEDE TITLGFTITA RDSHNAFATD DVTITITGTN
DDVDITGGTT SGSVTELADK YSENGVLEND YLHSITGSID ISDPDVNDSH TATFTDNSES
EQVTYLGSFD VADNGEDWTF TVSDEDLDYL DDDDDPLIQT YTITISDGHG SSDTQDVTIT
IHGSDDNASV AGRVYYWSNF DDIDDVATEM YAQDSMHTDG EDSGIEFRNI EKHDNGTYTL
DIYKTADTDE ADSFLIKLQL AKGSVATWEQ SHDLFDGEGN ELPDLTEFGF VTYASSLRTG
ECNIGGYSAS LLSLPNDQEV KLGTLTITAP IFDAKLLSGS YIGDTAIDAG DIFSEMKLNV
TEGEDITYYN GDGLYDYLNQ LNSGEDSFYY YDSVDPDDYN FDAIKEVTTE DANEVTPADA
LLALKLSMGI NTALPDLIAL FEESDTIPLI PYMYMAADVN KDGEVTIQDA LNILKMSVNY
ACAPEQEWIF SPLPHNEQNI LENMMNGFYV TYVNDLGEDV KVDWLDIKGI SGDETGIILS
IGDNAIPIEE WNIGVDWEQA SPELHDITVT DNDLQFVDLI GILKGDVNGS WGDPINFNPP
N