Gene Cag_1239 details

Gene Information

• Locus tag: Cag_1239
• ID: 3748272
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Chlorobium chlorochromatii CaD3
• Kingdom: Bacteria
• Replicon accession: NC_007514
• Strand: -
• Start bp: 1645671
• End bp: 1653056
• Gene Length: 7386 bp
• Protein Length: 2461 aa
• Translation table: 11
• GC content: 42%
• IMG OID: 637773772
• Product: VCBS
• Protein accession: YP_379543
• Protein GI: 78189205
• TIGRFAM ID: [TIGR01965] VCBS repeat

Plasmid Coverage information

• Num covering plasmid clones: 0
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTCTAATA CCGTAGTTTT TATTGACAGT CGCATTAGCG ATGTTAATGC GCTTATTTCG 
CGCTTTGCAG TTGGTACTGA GTATTATGTG CTTGATAGTG AGCGCGATGG CATTTTGCAA 
ATTACGGAGG CGCTTGCCGG TAAAAGCGGC TACAGCTCTC TGCAAATTTT TTCGCATGGA 
ACGGCTGGCT CTTTAATGCT TGGCAGCACG GTGCTCAATA ACGCAGCGCT TAGCAATTAT 
ACGGCGCAGT TAGCGGCTAT TGGTGGTGCG TTAACGGCAA GTGGTGATAT TTTATTGTAT 
GGATGTAATG TTGCGGCTGG TGATGTTGGG CAGCAGTTTA TTGCGGCGTT GGCTGAGGCT 
ACGGGTGCTG ATGTTGCGGC TTCGGATGAT TTGACGGGTT CGGCGGCGCT TGGTGGCGAT 
TGGGATTTGG AGTATGCAAC GGGTGCTATT GAGAGCGGTG TTGATACGAA TGTGGTGCAA 
GAATATGATG GGGTGCTGGA ACCACCAACT ACCACAATTA CTATCACATT GCCAACGGAA 
GCTGAGATTA GAAATAATTC AAATATAGAT CAAGGCTATA TTACGGAAAG CACGCTTGGC 
TCCAATGTTA CATTGTATTT GCAAGATATT CTTGCTGTTG ATACTACTAA TTTATTGAGT 
ACAACAGCAC CTACCTCCTT TGTTATTTCT GTAAGTTATG GTAAAATATC ATTCCTTAAA 
ACTAAGGTTG ATACTATTCC AATAGTTTCT GGAAATGGCT CAAATACAGT AACGCTTACT 
GGTACAATTA CCCAAATTCG GACGTTATTA ACGAATAATA CGATTTCATA TGTTGGGAAT 
ACGGGCTTTT CTGGTATTGA AACATTATCA GCAGGTATCA GTGGTGTACT TGCAAATAAT 
AGTGGTAATG CGTCGGGAAG TGCTAATAGT GAATTGAGTA TTGTTGGTAT TAACGATGCA 
CCGACTATTC TTGATGCTAA GGCTACTTTG ACGGTATCAG AAGGAAGTTT GCTTAATGAT 
GTTTTTGAGG GAAGTTTTAC TCTTTCAGAT CCTGATATTG CTCATTATAT CATGCAAGCT 
GACATAACGG TATTGCACGG TACGTTAAAA CTATCAGGAG ATGATTTAGA TTCTGTTACA 
GGTAATGAAA CAAAATCTGT TACCATAACA GGTTCTCGCG CTAATATTGA GCTTGCAATA 
ACAGCGTTAC AATATACTCC TGATGAAAAT TATAATGGAA GTGATACGTT AACAGTAACG 
GTTAATGACC TTGGAACAAC TAACGTTAAT CAAGGTAATC CTGATGAAGA TAAAACTGAT 
ATTCATCAAG TTACCATTAG TGTTGTGAAC CATGCTCCAG TTTTGGAAAA CGATTATACT 
CCGATCTTGA GTGAGATTTC AGAAGATATT AATAGTAGTA TAACGGAAAC GGAAGATGGG 
GATAACGCTG GTACTCTTGT AAAGGATATT ATTCCTGAAA ACGATCCTAC TGATTCAATT 
ACGCTTGATG CAATTACCGA TGAAGATGTA ACTTCCGCAT TACAATCAAT TTACATTACG 
GCTGTAGATT CAACCAATGG AAAGTGGCAA TTCAAGCTTG ATGGTCAAAC TACTTGGTCA 
ACAATAACAC TAACGGGCGA TACCGCATTA TTGTTAAGCG AAAACAATAG TCTGCGCTTT 
ATTCCTAACA ATAACTGGAG CGGTACAGCA ACCTTTACGT TTGGCGCATG GGATGGAACA 
GGACGTGATA TAAACAATAA TAATGCCTTA TATGAAGCTG GAGATTATGT AGTTATTACG 
CAGCGAGGTG TGTTGAATGC TCCATTTTCT CTTGATGTTG ACACCGCTAC AATTACCGTT 
AATCCGGTAA ATGATGCTCC TACCTTTACA GCATTTTCAG CTCCAATCAC TCCAGCGATC 
ACAACAAACC AGCCAAGTTT AGCTTTAGAA GATGGCGGGA ACACTGTTGG TGAGCCTTCA 
ACTACTCCAA TTACCATCAC TTTTGATGAT TTAGCAACAA AAGGTAATGA GGCTGATGCA 
AACGATGCGG CTTATGGTGG TGCGGTAACT GCGTTTGTGG TAAAAAGAGT GCTTTCAGGT 
ACTCTTACTA TTGATAACAC TGACTATACA GCAGGAACGG AAGATTTAAA TCTTACTATT 
TCAGAAAGTC AGGATGCCTC TTGGACGCCT GAATTAAATA AAAACGGCAT ACTTAATGCT 
TTTACCGTTG TTGCAAAAGA CAATGATACT ACGGATTCAA AAGAATCTAC AACACCATCG 
GTAACCGTTA CAATAAACCT TACGCCCGTT AACGATGCGC CAACGGTAAT TCCCGCTACA 
CAATCAGCAA CCTTAACGGC AGGTAGTGAT GATGTTACGT CAGCATACAT CTCTATGGCG 
ATGTCGGACG TGGACACGGG GGATATTGTT AAAGTTGATG GAGACTGGTT AGCTGATGAA 
AGTGCAGCAA ACGACGGAGA AGAGCACTGG ACATCAAGTG ATGGTGGAAA AACTTATACC 
TTTGACGGTT CATACGGTAC TGCAACACTT TACCGTGTAG CAACAACTGA TGGACATTCT 
GCTGGCGAAG TTACTTACTC ATTTGATTAT GCTGATACCG ATTTAGATTC TTTAGCTGCC 
AATGCAACAG CAACTGATAG CTTTACCATT GTGGTATCTG ATGATGCAAA GGTAACAGCA 
ACTGCTGATG CTGTCTTTAC CATTAATGGT GCAAACGATG ATCCAATAAT AACAAGCGGT 
ACACAATCAG GTTCTGTAAT AGAAAATAGC TCTGAGACCG CGACAGGTGA TGTAAATGCA 
ACCGATATAG ATTACGGTAC AACTTTAAGT TATAGTGGTG ATGCTACTGG AGATTACGGA 
AGCCTTGATG TAACTGAGAT TGATGGTACT TGGACCTATA CCTTAACCAG CAATGCGCTT 
GATGATGGAG AAAGTGATAT AGAATCGTTT ACAATTACCG TATCGGATGG TGATGGAGGT 
AGTGCAACTC AAGATGTAAC TATTACGGTA TGGGGCGATA ATGATCCACC TACCATTACT 
GAGAGCGCAC AAAGTCCTGA CTACGTTACG GAAGATGGCG GAATTAACAA CGGAACTGCT 
GGCACATCCA GTGCTCATAT TGATGTAACA CTTAGCGATG CCGATGGTGG TGATACGGTA 
AGCTACGTAA CAACAGGTTG GTCTGGTTCT GGAAATACTT ATACCAAAAC CGGAACCTAT 
GGCACTGCAA CGCTGCACCC CAATACGCAT GTTATAGATT ATGTGCTGAA TAACAGCGAT 
ACCGACACAC AAGCTCTTGA TACAAACGAT GTAGTTTCTG ATTCATTCTC TATTACCGTT 
ACGGACGGCA CTGATTTTAC ATCGGAAACT ATTGCGTTTA CCATTCACGG CACAAATGAT 
GCCCCAACTA TTGATGTATC TGATACCGGT GAGAGCTTTA CCGAAAGTGA TGATGCAAGT 
ATGCAAACGC TTTCAGCAAC CGGCTCCATT ACCTTTGACG ATGTTGATGC AAGCGATTCG 
GTAAGCCTTA CCTTTGCCGA GAGCACCGAT ATTTCATGGT CGGATAGCAA TGGTGGTGGA 
GACTATGATA ATGAATTGGA TAGCGATTAT AGTTCTGTAA AAGCAGCGTT GCTTAATGGT 
TTTAGCACAA CAGCTACAGG TTGGAGCTAT AGTACAAGCG GAGGTAGTAG TCTTATTGGA 
TCGGAGTTTG GTGCTATACC GAGTAATTAT TTTCTACCAC CACCGTTCTC ATTTACTTCA 
CTGATTACAG GAGTGCTTGG TGACCAAAAT GATGTAACAG AAGGTCAGTT TAAGTATGAT 
GTTTACACTC TCTCCAATGT TGTAAGTGGA ACTTTGGTTT TTGCCGCTAT AGAATCAAGT 
GCCTTTCCAG AATACGCAAA TGTTTATACA TCTGCCAATC TTCAGTTGAG ACAGCCCATC 
ACTCCAAGAA TAATCAGTAA TACTACAGAC GGTAATGCAC GGATCTTGGC ATGGTTTTAT 
CTGCCAGGAG ATACTCTTTG GGTTGGTTCG GATGCACCTC AACAGAGTGG TGCCTACAAT 
CTCTACCTTG GAGGTACAAT TGCAGAAAGT GGCGATGGCG TTGACCTCGA CTTCCTTGAT 
GAAGACGAGC AACTCACATG GAGCTACACC GTCTCTGCTA CTGACGGCAC AGCTTCCACC 
ACCTCAACCG AATCGGTAAG CTTTACCATT ACCGGCGAAA ACGATGCGCC GACCATTAGC 
ATTAGCGATG ATTCGGCAAC CATTACAGAA AACAGTGGTT CTGATGTTTC AGACTTGCAA 
ACCATTGACG TAAGTGGCGA TATAGAAATT GACGATCCCG ACACGCACGA TGATACCGTA 
ACGGTTACCT CTTCGTTGGA TAGCATTTCA TGGAGTGGAG GCGATACCAC AGATAGTGTT 
TTTGATACGT TAACCGATGG ATTTACTGCT GATGAAGATG GCTGGAGCTA CTCAGTAACC 
GATGGCGTTG ACCTCAACTT TATTGGCGAA GATGAAACCG TTGTGCTCAC CTACAACGTA 
ACGGCAAGCG ACGGCACTGA AAGCGATACC GATACCGTAA CCATTACCAT TGAAGGCACC 
AACGACACTC CAACCGTGGA TGTTGTAGAA ACCAGTATAA CCTTTGCAGA GGATGATACG 
CTAAGTGATA GTGGAACCGT AAGTTTTAGC GATCTCGACA CCAACGATGT CATTGATGTT 
ACAGAAAGCT ATAACAATGA TATTGCATGG AGCTATAGTG GAGGTACCTT AACTGATGAA 
ATGATTGGTG AGGATATTTC TACGTTAACC AATGGATTTA CTGCATGGGG AGAAGATTTG 
TCTTCAGATG AAACAGTATG GAATTATAGC GCAACCCTTG GAACTGATGA CCTCGATTTT 
CTTGATGCAG GTGAAACACT CACCTTTAGC TACACCGTAA CCGCTACCGA CAACAACGGT 
GCAAGTGCTA CCGATACCAT TACGGTTACT ATTACCGGTT CGAATGATAC ACCTCACTTC 
AACCAAGATT CTGTAGATAA CGGTTCAGTA ACAGATACAT CGGCAAGTGA CACATTCTCT 
AATGATATTA TTGGTACGCT TACAGCTGAT GATGTTGATC ACAACGATAC CATAACATAT 
GGCGTTGTTA ATGGCACTGG AACTTACGGT ACCTTAACCG TGGATTCTTC AACCGGCGTT 
TACCGTTATG ACGGTAATGA TAATACTATT AATGCGCTGA ATGCTGGTAC ATGGAGTGAT 
ACATTTACCG TTACTGCGAG CGACGGAACA ATAAGTGAAT CAGCTACTGT TGTTATTACC 
ATTCATGGAG CAAACGATAA TCCAACGGTA AGCATCAACG ATGATTCTTT AAGCTTTACC 
GAAGATGTTA GTGCCTCTGC ACAAGATTTA ACCGATAGTG GTTCTATTAC TTTTGACGAT 
GTTGATACAA GCGATAACGT TGATATTATT GCAACGTATA AAAACAATAT CTCATGGAGT 
GGAGGTACTT TAGCAAATCA AATGAGTGGT GAGGATAGCG GTAAATTAAC ATCAGGTTTC 
CACGCATCAG CAACCGACAG TACCTCTGAT AGTATAACTT GGGACTACAG TGCAACAGAT 
GTAGATCTTG ATTTTCTTGC TGAAGATGAA ACCATCACTC TTGGTTTTAC CATAACTGCA 
CGCGATAGCC ATAATGCCTT TGCTACTGAT GATGTAACCA TTACCATCAC TGGCACCAAC 
GATGATGTTG ATATTACTGG TGGTACTACG AGCGGTTCAG TAACAGAATT GGCTGACAAA 
TATAGTGAAA ATGGTGTTCT TGAAAATGAC TATCTCCATT CTATAACTGG TTCTATTGAT 
ATCTCTGATC CTGACGTTAA TGATAGCCAT ACAGCCACAT TTACGGATAA TAGTGAATCA 
GAACAAGTAA CCTATCTAGG TAGTTTTGAT GTTGCTGATA ATGGAGAAGA TTGGACGTTT 
ACCGTAAGCG ATGAGGATTT AGACTATTTA GACGATGATG ATGATCCTCT TATCCAAACT 
TATACCATAA CCATCTCTGA CGGGCACGGT TCAAGCGATA CGCAAGATGT TACCATTACC 
ATCCACGGTT CTGACGACAA CGCCTCCGTT GCAGGTCGTG TTTACTACTG GAGCAACTTC 
GATGACATTG ACGACGTAGC AACCGAAATG TACGCCCAAG ATTCAATGCA CACCGATGGA 
GAAGATAGTG GCATTGAGTT TAGAAATATC GAAAAACACG ACAACGGCAC CTACACGCTC 
GATATTTACA AAACAGCCGA TACCGATGAG GCTGACAGCT TCCTTATTAA GCTCCAGTTA 
GCAAAAGGCA GCGTTGCCAC ATGGGAACAA AGCCACGATC TTTTTGATGG CGAAGGTAAT 
GAACTACCGG ATCTTACTGA GTTTGGATTT GTTACCTATG CCAGTTCTCT ACGCACAGGC 
GAATGCAATA TCGGAGGTTA TAGCGCATCA CTACTGTCAT TACCGAACGA TCAAGAGGTT 
AAGCTTGGCA CGCTTACCAT TACAGCGCCA ATTTTTGATG CGAAACTGCT TTCGGGTAGT 
TACATAGGTG ATACTGCAAT TGATGCTGGT GATATCTTCT CAGAAATGAA ACTTAATGTT 
ACAGAAGGCG AAGATATTAC TTATTACAAT GGTGATGGAT TGTACGACTA CTTAAACCAA 
CTTAATTCAG GTGAAGACTC ATTCTATTAT TATGACTCCG TTGATCCTGA TGACTATAAC 
TTTGATGCCA TTAAAGAAGT TACGACTGAA GATGCTAATG AAGTAACTCC AGCAGATGCT 
TTATTAGCAT TAAAACTAAG TATGGGAATT AATACTGCAT TACCAGACTT AATTGCCTTA 
TTTGAAGAAT CAGACACTAT TCCATTAATA CCATATATGT ATATGGCAGC AGATGTGAAT 
AAAGATGGTG AAGTAACAAT TCAAGATGCC TTGAATATCT TAAAAATGTC TGTTAATTAT 
GCATGTGCTC CAGAGCAAGA GTGGATATTT TCACCATTAC CGCATAATGA ACAAAACATA 
TTGGAAAATA TGATGAATGG TTTTTATGTA ACCTATGTTA ATGATTTAGG TGAAGACGTT 
AAGGTGGATT GGCTTGATAT TAAAGGCATA AGTGGAGATG AAACTGGCAT TATTCTCTCT 
ATAGGTGATA ATGCGATACC AATTGAGGAA TGGAATATAG GGGTAGATTG GGAGCAGGCA 
TCTCCAGAGC TGCATGATAT AACTGTAACT GACAATGACC TACAATTTGT AGATCTTATT 
GGCATCCTCA AAGGCGACGT CAACGGCAGT TGGGGCGACC CAATTAATTT TAATCCACCC 
AATTAA 

 

Protein sequence

MSNTVVFIDS RISDVNALIS RFAVGTEYYV LDSERDGILQ ITEALAGKSG YSSLQIFSHG 
TAGSLMLGST VLNNAALSNY TAQLAAIGGA LTASGDILLY GCNVAAGDVG QQFIAALAEA 
TGADVAASDD LTGSAALGGD WDLEYATGAI ESGVDTNVVQ EYDGVLEPPT TTITITLPTE 
AEIRNNSNID QGYITESTLG SNVTLYLQDI LAVDTTNLLS TTAPTSFVIS VSYGKISFLK 
TKVDTIPIVS GNGSNTVTLT GTITQIRTLL TNNTISYVGN TGFSGIETLS AGISGVLANN 
SGNASGSANS ELSIVGINDA PTILDAKATL TVSEGSLLND VFEGSFTLSD PDIAHYIMQA 
DITVLHGTLK LSGDDLDSVT GNETKSVTIT GSRANIELAI TALQYTPDEN YNGSDTLTVT 
VNDLGTTNVN QGNPDEDKTD IHQVTISVVN HAPVLENDYT PILSEISEDI NSSITETEDG 
DNAGTLVKDI IPENDPTDSI TLDAITDEDV TSALQSIYIT AVDSTNGKWQ FKLDGQTTWS 
TITLTGDTAL LLSENNSLRF IPNNNWSGTA TFTFGAWDGT GRDINNNNAL YEAGDYVVIT 
QRGVLNAPFS LDVDTATITV NPVNDAPTFT AFSAPITPAI TTNQPSLALE DGGNTVGEPS 
TTPITITFDD LATKGNEADA NDAAYGGAVT AFVVKRVLSG TLTIDNTDYT AGTEDLNLTI 
SESQDASWTP ELNKNGILNA FTVVAKDNDT TDSKESTTPS VTVTINLTPV NDAPTVIPAT 
QSATLTAGSD DVTSAYISMA MSDVDTGDIV KVDGDWLADE SAANDGEEHW TSSDGGKTYT 
FDGSYGTATL YRVATTDGHS AGEVTYSFDY ADTDLDSLAA NATATDSFTI VVSDDAKVTA 
TADAVFTING ANDDPIITSG TQSGSVIENS SETATGDVNA TDIDYGTTLS YSGDATGDYG 
SLDVTEIDGT WTYTLTSNAL DDGESDIESF TITVSDGDGG SATQDVTITV WGDNDPPTIT 
ESAQSPDYVT EDGGINNGTA GTSSAHIDVT LSDADGGDTV SYVTTGWSGS GNTYTKTGTY 
GTATLHPNTH VIDYVLNNSD TDTQALDTND VVSDSFSITV TDGTDFTSET IAFTIHGTND 
APTIDVSDTG ESFTESDDAS MQTLSATGSI TFDDVDASDS VSLTFAESTD ISWSDSNGGG 
DYDNELDSDY SSVKAALLNG FSTTATGWSY STSGGSSLIG SEFGAIPSNY FLPPPFSFTS 
LITGVLGDQN DVTEGQFKYD VYTLSNVVSG TLVFAAIESS AFPEYANVYT SANLQLRQPI 
TPRIISNTTD GNARILAWFY LPGDTLWVGS DAPQQSGAYN LYLGGTIAES GDGVDLDFLD 
EDEQLTWSYT VSATDGTAST TSTESVSFTI TGENDAPTIS ISDDSATITE NSGSDVSDLQ 
TIDVSGDIEI DDPDTHDDTV TVTSSLDSIS WSGGDTTDSV FDTLTDGFTA DEDGWSYSVT 
DGVDLNFIGE DETVVLTYNV TASDGTESDT DTVTITIEGT NDTPTVDVVE TSITFAEDDT 
LSDSGTVSFS DLDTNDVIDV TESYNNDIAW SYSGGTLTDE MIGEDISTLT NGFTAWGEDL 
SSDETVWNYS ATLGTDDLDF LDAGETLTFS YTVTATDNNG ASATDTITVT ITGSNDTPHF 
NQDSVDNGSV TDTSASDTFS NDIIGTLTAD DVDHNDTITY GVVNGTGTYG TLTVDSSTGV 
YRYDGNDNTI NALNAGTWSD TFTVTASDGT ISESATVVIT IHGANDNPTV SINDDSLSFT 
EDVSASAQDL TDSGSITFDD VDTSDNVDII ATYKNNISWS GGTLANQMSG EDSGKLTSGF 
HASATDSTSD SITWDYSATD VDLDFLAEDE TITLGFTITA RDSHNAFATD DVTITITGTN 
DDVDITGGTT SGSVTELADK YSENGVLEND YLHSITGSID ISDPDVNDSH TATFTDNSES 
EQVTYLGSFD VADNGEDWTF TVSDEDLDYL DDDDDPLIQT YTITISDGHG SSDTQDVTIT 
IHGSDDNASV AGRVYYWSNF DDIDDVATEM YAQDSMHTDG EDSGIEFRNI EKHDNGTYTL 
DIYKTADTDE ADSFLIKLQL AKGSVATWEQ SHDLFDGEGN ELPDLTEFGF VTYASSLRTG 
ECNIGGYSAS LLSLPNDQEV KLGTLTITAP IFDAKLLSGS YIGDTAIDAG DIFSEMKLNV 
TEGEDITYYN GDGLYDYLNQ LNSGEDSFYY YDSVDPDDYN FDAIKEVTTE DANEVTPADA 
LLALKLSMGI NTALPDLIAL FEESDTIPLI PYMYMAADVN KDGEVTIQDA LNILKMSVNY 
ACAPEQEWIF SPLPHNEQNI LENMMNGFYV TYVNDLGEDV KVDWLDIKGI SGDETGIILS 
IGDNAIPIEE WNIGVDWEQA SPELHDITVT DNDLQFVDLI GILKGDVNGS WGDPINFNPP 
N