| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Syncc9902_1161 |
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| Symbol | |
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| ID | 3742811 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Synechococcus sp. CC9902 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007513 |
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| Strand | + |
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| Start bp | 1126914 |
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| End bp | 1129268 |
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| Gene Length | 2355 bp |
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| Protein Length | 784 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 637771341 |
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| Product | RNA binding S1 |
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| Protein accession | YP_377169 |
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| Protein GI | 78184734 |
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| COG category | [K] Transcription |
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| COG ID | [COG0557] Exoribonuclease R |
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| TIGRFAM ID | [TIGR00358] VacB and RNase II family 3'-5' exoribonucleases |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.140399 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAATTCA CGGTCGCCGA TCTACTCGAC CAGTTGTCCT CCAGTGATTC GGTTGAGACA
GCTGTCGTTG CCAAAATACT GAAGCTGACG AATCAATCAG ATAAGAAATC TTTGGACATA
GCGATTGATG CCCTCTCAAA AATGGGTGTT CTGACTCGCC GCGATGGAGA TGTTGTTGCA
CTTTCTCGAA ACGATGAATT GATTGATGCC CGACTTCGAT GTAGCAGTAA GGGATTTTGT
TTTGCGATTC GAGACGATGG CGGCGACGAT ATTTATATCC GAGATCATCA ACTCAACCAT
GCCTGGAACG GCGATCGAGT TCTTGTAAGG ATTACGCGGG AAGGGGGTCG TCGTCGTTCT
CCGGAAGGAG GTGTGCAGTG CATTTTGGAG CGTTCCACTA CTTCACTTCT TGGACAGGTT
GAACGTCGAG ACGATCAATT GTTTGCTGTT CCACTCGACG ATCGGATGCT CACCACCATC
CGACTGCCGG ATACAGCGAT GGAACATTTG TCGAGTGAAG AGCCCACTGC AGTCGTTGAG
GTTCTTGTCG ATCGCTATCC AATTGCTCAA CATCCGGCCA TGGGGCAAGT GGTTCGTCCG
CTTCCTCTGA ATGGTGGACC AGCCGCAGAT CGCGATCTTC TTTTAACCAA AGCAGGACTT
CACCAACGTC CCTCGCCACC CCGTGGCTCT GGCAAGGCTC CTGCAGCGAA AGGTCGTGTC
GACTTCACAG ATCAACCCGC TTTGTTGTTG AGAAGTTGGA CTGATTCGAG CGCACCTGGG
CTTCCCGCTG TTCATGTGGA AGCGCGTGAT GGAGGTTGTC GGCTTTGGTT GCATGCTCCT
GCTGTTGCAG AGCGCATCAT CGGGAGCAAT GCTCTGGACC TCTGGTTGAG AGAACGGATG
GAAGCCCTTT GTCTCGGAGA AAATTGGCAA CCATTGCTCC AACCTTCGCT CAACGCCATA
ACCAACTTCG TACCTGGTGA AGAAGCTGAA GCCGTAACCG TTCGCATGGA TATATCCCAA
GAGGGTGAAC TAACTGATTG GGAATTCAGT CTTTCAACTA TCAAGCCGGC GGCTTTCATT
GGGGTTGCAC AACTGAAAGC CCTTGATGAA CGCAAACCCA AGTCGCGAAG CATTCCGGCA
GCGCTCAAAG GGATCAAAGA TCATTTAGGT CAACTTGAGA CACTGCGCTT TTGTGAAAGT
TGCTTGAGGA AGAATGAGCA GGCTCAAGGT TTCGTTCAGT TGGACCTATG TCCACCGCAA
TTAGAAAGCT TGGCTGATCT GCGTTGGGCA GATCCGATTA GCTTGCGCCA TCGCTGGATT
GACGCACCAG TTTCTTCAGA TCCTCATTCT CTCCTTCAGC CCTTGATTCG CGCTGCAGAT
CGTGCCTGGC AACTGCATCG TGAAGCACTG AAACTTCCAG GCATCACTAC ACACACAGGA
GATCCAGATC CATCCCCCCT CACTGATGTA GCCAAAAGTG CAATTGCACT TGAATTGCCC
TTGGAATTGG ATGAGGAAGG GAGCCCTTCT GCGCAGGAGT TAATCGGAGT GTTTAGTGAG
TCACCGCATC GAAGGGTGCT CGAACAACAA CTCAGCCATG CCTTGCCAGC AATCAATTTT
GTGGCTGTTG TACCAACGTT TGCACCCCTT GATGCAGAGC AAACTTTGCC TGAAGATTCC
TTAGGGGATC CTGGTCATGC GCCTGTTGAA ATCCTCCAAA AAGTCTCTTC AACGCCATGG
TGTTGCGCCA CGATGAGTTA TGCGCATCTG GTGAATCAAC AAATCTTGGT GTCATTGCTC
CAAGACGGTA AAGATCGACC AACAGTGCGC CAAAAAGAGA GATTGATTCT TGGCCGTCAA
GGTTGCGAAC AAGATCTCAG CTGGGCTTTA TTCACCGGAA GTCAAAACGA AAAACTCAAG
TCTTTGGTTA GCGATCGTTT AGTCCAACGG CTGAATGGTC GCCGGCGGCA AGTCTTGGAG
CTTGAAAAAG ATCTGTTATC CATGGTTCAG GCCCGCGCTG CTCAGCCTTT GGTGGGATTA
ACGACTGATG GTCGAATCAG TGGAGTTCAA AGCTATGGAT TTTTTGTCGA AGTTGGTGAA
AGTCGTGTGG AAGGTTTGGT GCACGTCAGC TCACTAAACG ATGATTGGTA TGAATATCGT
TCACGACAAA ATCGTCTCGT TGGTCGGAAA AACAAACGCG TCTATCAACT TGGAGATACG
GTTCAAGTCC GTGTAATCAA GGTGGATGTT TTACGCAACC AAATTGATCT TGAGGTGGAT
CCTGTGTTCT TTGACAAACC AACGGATCAA GGAGAAATTC CTCAATCTGC ATCGATCCCA
TTCGACAATC AATAA
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| Protein sequence | MKFTVADLLD QLSSSDSVET AVVAKILKLT NQSDKKSLDI AIDALSKMGV LTRRDGDVVA
LSRNDELIDA RLRCSSKGFC FAIRDDGGDD IYIRDHQLNH AWNGDRVLVR ITREGGRRRS
PEGGVQCILE RSTTSLLGQV ERRDDQLFAV PLDDRMLTTI RLPDTAMEHL SSEEPTAVVE
VLVDRYPIAQ HPAMGQVVRP LPLNGGPAAD RDLLLTKAGL HQRPSPPRGS GKAPAAKGRV
DFTDQPALLL RSWTDSSAPG LPAVHVEARD GGCRLWLHAP AVAERIIGSN ALDLWLRERM
EALCLGENWQ PLLQPSLNAI TNFVPGEEAE AVTVRMDISQ EGELTDWEFS LSTIKPAAFI
GVAQLKALDE RKPKSRSIPA ALKGIKDHLG QLETLRFCES CLRKNEQAQG FVQLDLCPPQ
LESLADLRWA DPISLRHRWI DAPVSSDPHS LLQPLIRAAD RAWQLHREAL KLPGITTHTG
DPDPSPLTDV AKSAIALELP LELDEEGSPS AQELIGVFSE SPHRRVLEQQ LSHALPAINF
VAVVPTFAPL DAEQTLPEDS LGDPGHAPVE ILQKVSSTPW CCATMSYAHL VNQQILVSLL
QDGKDRPTVR QKERLILGRQ GCEQDLSWAL FTGSQNEKLK SLVSDRLVQR LNGRRRQVLE
LEKDLLSMVQ ARAAQPLVGL TTDGRISGVQ SYGFFVEVGE SRVEGLVHVS SLNDDWYEYR
SRQNRLVGRK NKRVYQLGDT VQVRVIKVDV LRNQIDLEVD PVFFDKPTDQ GEIPQSASIP
FDNQ
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