| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Syncc9902_1138 |
|---|
| Symbol | |
|---|
| ID | 3743274 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Synechococcus sp. CC9902 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007513 |
|---|
| Strand | + |
|---|
| Start bp | 1103747 |
|---|
| End bp | 1105771 |
|---|
| Gene Length | 2025 bp |
|---|
| Protein Length | 674 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 637771318 |
|---|
| Product | exoribonuclease II |
|---|
| Protein accession | YP_377146 |
|---|
| Protein GI | 78184711 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0557] Exoribonuclease R |
|---|
| TIGRFAM ID | [TIGR00358] VacB and RNase II family 3'-5' exoribonucleases |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.0570115 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGGTGAAAG CCTCAGTTAA ATCCAACGAC ATCGTTGCTG TTGTTTTAAA GGGTGTCCCC
CTGATCGGCC GTCTTCTGTC TCTCAAGGGC AGCAAGGCGG TTGTTTCATT TGGGGGCCAA
CGCCGGGATC AGGACCTCCC CCTTCGAGAG CTTGTCGCTG TCGATCATGT TTCGGACCAA
CCTCTTCCAA CGCCAGAAGA GGTATCGGAG GTGATGCCCG ACAGCAAAAC AGCAGCAGAG
GCTTGGTGGA TTTTGGCTGC TGATGCTGAG TCAATGCAGC AGAACCAAAC TCTCACCGAG
TTGACGGATC TCCTGAGAGC CAACGTTGAT ACTCCTGATA TCGCAGCCAC CTGGTCGTGG
TTGCATGGCG ATCAACCCTG GTTCCGCTGG CGACGGGATC AATCCATTTC AGTGGTGCCC
CTAGACGAGA TTCAACGCCA AAGGAAGCTT CAAAAACAAC TTCGCCTCGC CGAAGAACAC
AGTCGGCGAC AGATCGCAGT TCTTGCTCCC TCAACTCCAC TCACTGCAGA GCAGTTAGAG
AAGCTTGATT CTGAGTGGAC TGAGCGATTG GATCGCTTGG TCGATCGTGC TCGTGATGAT
GCATCCAACT TGAAGGACGA TCCGGATGTG GCCCTTTGGG CGAAAGAATT TTCACGAACT
CTTGATCAGG GCTCCCTTCG GCAGTGGTGC ATCCAGCGCG GGCTACTGGA TCCGCATCAG
CCCCGTGCTC TGCAAAGCAG TGTGTGGTCC AAAAAGTTTG CGATTGAGCT TGAGGACGAG
GCCCAACAAC TGATTTTGTC TGCGGCGCAT CCGCAACCCG GAGACGACGA CCGTCTTGAT
CTGTGTCATC TGGCGACTTA CACCCTCGAC GATGCCGGGA CCCGCGAGAT TGATGACGGT
ATTTCCCTCG ACGATCAGAA CGGTGAAGTT TGGATTTGGG TTCATATCGC TGATCCAGCA
CGCCTGATCC CCCCTGGTAG CCCCTTAGAT CAAGAGGCCC GACGTCGGGC CACCAGCTTG
TACCTTGCCG ATGGCGTGCT TCCGATGCTT CCCCTCAGCC TTGCCGCAGG CCCCCTAAGT
CTTCGTGCCG GGGAACGCAC AGCGGCAGTG AGTGTTGCTG TGCGGTTGGA CAGTGCTGGA
GCGATCGCTG ATCGTCGTAT TGCGAGAAGT TGGGTGCGGC CGCGCTATGG CCTCACCTAT
GCGGATGGCG ACGAGCTCAT CGAATTAGCT CCTCCTGGTG ACGAAACACT GGCGGATTTA
TCCCGGTTGA TGCAGCTGCG AAGTCGATGG CGTCGTCAAC AAGGGGCTCT GATGTTTGAT
CGAATGGAAG GACGCTTTCG GCGGCAAGAA GGTGAGTTAT CCCTTCAGTT GGTCGAACCC
AGCCCTGCTC GTTTGATGGT GAGTGAAGCG ATGCTGTTGA TGGGAGCAGT TGTTGCCGAT
TTTGGTTGTC AAAATACGTT GCCTTTGCCA TTCCGTAGTC AGCCCCCAGC TGAACTTCCG
TCGCAGGCTG AACTCGACCA ATTGCCCGAA GGGCCAGCCC GCGATGCTGC GATCAAGCGA
TGTCTCAGTC GTGGGGTGCA GGGAACCCAA CCCATGGCTC ACTTCAGCCT TGGACTTGCT
GCCTATGTGC AAGCAACTTC TCCGATTCGT CGTTATGCCG ACCTGGCCTC CCACCGTCAA
ATCATTGCTC AGCTTGAGGG ATCTACCCCG TTAAGTGAGC CTGAGGTGGG TGAATTAATC
GACGATCTAG ACGATCCACT CCGTCAGTCG ATTCAAATCA GCCGTGAAGA CCAGCGCCAT
TGGCAACAGG TGTGGTTTGC TCAACATCGA GATCAACGTT GGGATGCCGA GTTTCTTCGT
TGGCTACGAC CCCAAGACGG CTTAGCGCTT GTCCATCTTG CTGATCTAGC CATGGATGTT
GTTGGTCGCG TGGATCAAGC CAATCCGAAT CCAGGCGATC GGATGACGCT GACGGTGAAG
CTGGCGGATC CAGACCGGGG CGAATTGCAG CTTCAGCTGA CTTAA
|
|---|
| Protein sequence | MVKASVKSND IVAVVLKGVP LIGRLLSLKG SKAVVSFGGQ RRDQDLPLRE LVAVDHVSDQ
PLPTPEEVSE VMPDSKTAAE AWWILAADAE SMQQNQTLTE LTDLLRANVD TPDIAATWSW
LHGDQPWFRW RRDQSISVVP LDEIQRQRKL QKQLRLAEEH SRRQIAVLAP STPLTAEQLE
KLDSEWTERL DRLVDRARDD ASNLKDDPDV ALWAKEFSRT LDQGSLRQWC IQRGLLDPHQ
PRALQSSVWS KKFAIELEDE AQQLILSAAH PQPGDDDRLD LCHLATYTLD DAGTREIDDG
ISLDDQNGEV WIWVHIADPA RLIPPGSPLD QEARRRATSL YLADGVLPML PLSLAAGPLS
LRAGERTAAV SVAVRLDSAG AIADRRIARS WVRPRYGLTY ADGDELIELA PPGDETLADL
SRLMQLRSRW RRQQGALMFD RMEGRFRRQE GELSLQLVEP SPARLMVSEA MLLMGAVVAD
FGCQNTLPLP FRSQPPAELP SQAELDQLPE GPARDAAIKR CLSRGVQGTQ PMAHFSLGLA
AYVQATSPIR RYADLASHRQ IIAQLEGSTP LSEPEVGELI DDLDDPLRQS IQISREDQRH
WQQVWFAQHR DQRWDAEFLR WLRPQDGLAL VHLADLAMDV VGRVDQANPN PGDRMTLTVK
LADPDRGELQ LQLT
|
|---|
| |