| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Syncc9902_1039 |
|---|
| Symbol | |
|---|
| ID | 3743194 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Synechococcus sp. CC9902 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007513 |
|---|
| Strand | - |
|---|
| Start bp | 1002947 |
|---|
| End bp | 1005421 |
|---|
| Gene Length | 2475 bp |
|---|
| Protein Length | 824 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 637771213 |
|---|
| Product | DEAD/DEAH box helicase-like |
|---|
| Protein accession | YP_377047 |
|---|
| Protein GI | 78184612 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1201] Lhr-like helicases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.0171221 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCCAGGAC GTTCGCATGA AGTGGATTCA ACCGATCAAC TACAACCAAT TCATAAATGG
TTTTATCATC AGGGATGGAC GCCACTTCCA TTTCAGAGAA AAACTTGGGA AGCATATTTA
GAAGGCAAAA GTGGCCTTAT CCAAGTACCA ACAGGGTCTG GAAAAACCTA TGCAGCAGTG
ATGGGCCCCA TCGCCCGAAT GCTGACAGAT ACCGCAGATC GTAAAGGGAT ACGATTGCTA
TATCTCACCC CACTTCGAGC GCTGAGTCGG GATCTAGCCC TAGCAATACG AGATCCAATA
GAAGTGATGA ATTGGCCATT GCGCGTCGGC ATCCGTAACG GAGACAGCAA AAGTAGTGAA
CGCACGAAAC AACTTAAATC ACCACCGGAA ATATTAGTTA CCACTCCAGA ATCACTAACT
CTATTGCTCA GTAATCCGAA GGCAGAGGAG CTGTTCAATA ACCTCGACAC CGTGATCTTG
GATGAATGGC ATGAATTGAT GGGAAGTAAG CGTGGTAGCC AAACAGAGCT ATGCCTTTCA
TGGCTTCGCC AACAACGTCC AGGCCTACAA ACCTGGGCGA TCAGTGCCAC GATTGGAAAT
TTGAACCAGG CCGCACTGCA CGCACTGGGC ACGAAGGGCA AACCCATAAT GGTTGGGGGC
GCACCGGCAA GGACCACTTA TATCCACAGC ATATTTCCAG AAAAGATTGA TGGCTTCCCT
TGGGCGGGTC ACCTCGGCCT ACGAATGTAT GAAGAGCTTG TAGCTGTTCT CAATCCGAAC
ATCAGCACAC TGCTGTTCAC TAACACAAGA AATCAATCAG AACGTTGGCA TCAATGTCTT
CGTTTCGCCT GTCCTGAAAT GGAAGGGGCA CTCGCTTTAC ATCACAGTGC AATCGATCGT
GGAGAACGAG AATCCATTGA ATCAGCTGTA AAAGCAGGAG ATATTCGTTG GGTGGTGTGC
ACCAGTTCTC TAGATTTAGG TGTGGATTTT CAGCCAGTAG AACAGGTTGT ACAAATTGGT
AGTCCAAAGA ATTTAGCTCG TCTTTTACAG CGAGCAGGTC GATCATCCCA TATCCCAGGA
GGGACCTCTA AAGTATTATT TATGCCAACC AATGCACTGG AGCTTCTAGA ACTAAGCGCA
GTTCGACGAG GCTTAGAAGA AGGATTAGTC GAGCAGCGAA AACCACCAAA TGCTCCACTT
GATGTATTAC TCCAACACCT TACAAGCCTT GCTTGTGGGC CAGGGTTCAA CGCAGAACAA
ACCCTAAAAG CAGTAAAAAC GAGTGCATGC TATGAACATC TGAGCCAGGA AGACTGGGAT
TGGTGTCTCA TATTTCTCAA AGAGGGTGGT GAATGCCTAG GTGCATACCC GAGATACAAA
AAGCTTGAAT GGAATAAGGA AAGCAAGAAA TATCATATCC GCGAAAAAAT GATCGCCAGA
CTGCATCGAT TCAATATTGG TACGATTACA GCAGCACCAT CGATCACAGT CCGATTCATT
CGAGGAGCTG TATTAGGCCA TGTTGAAGAA ACATTTATTA GCCAGCTAAA ACCCAAAGAT
GTGTTCTTTT TTTCGGGACG ACAACTCGAG TTTATTCGAC TCAGAGAGAT GACAGCCTAC
GTCAAAGTCA GCACGAAAAA AAGTCGTACA GTACCAGCAT GGGCAGGAGG TCAAATGGCA
CTATCCGACC TGCTGACACA TCACCTACGA CAAGAAATAG ATCGAGCCAG ACGAGAAGAT
CTAGACACAC CGGAATTAAA AGCATTAAAA CCATTATTTG ATCGACAGCA GGATTTATCT
GTTCTACCAA AAACGAATCA GCTGTTAATC GAAACCTGTC AAACACGCGA GGGGAGCCAT
CTATTCGCAT ATCCATTTGA AGGTCGATTT GTTCACGAGG GAATCGGATT TCTGTGGGCA
TCAAGACTCA CAAAGCTGAA TCGCGGCACA ATTACAGTAT CTGTTAATGA TTATGGATTT
GAATTATTAG CACCAAGGAG CTACCCAATG GCAGAGATTG TTGAAGAATA TTCCGAGCTC
CTACTTAATA AAGAAAATCT CGAGAATGAT TTACAGAATG CACTCAACCT TTCAGAACTG
CAACGACGAC GTTTTCGGGC CATTGCACAA ATCGCAGGTC TAATGAATCG TGGCTTTCCA
GGATCAACCA AAAGCACCGG CCAACTTCAA ATTAGTGCGT CTCTTTTATT TGATGTATTT
AATAGACATG AACCAAGCAA TCGATTACTT CAACAGGCTT ATCAAGAAGT GATGCACGAT
CAACTAGAGC TCAGCAGATT GGAACATGCA CTTACTCGGG CCGCTGAACA AGAATGGCTG
CATGTCCAAA CACCACGCCC TGGACCACTA GCCTTTCCAT TGTTGGTCGA GCGCCTCAAT
TCACGCATGT CAAACGAGAC TGTGCTCGAA CGAATCATGC GCATGCAAAA GGATGCTCTG
CACAAAGAAT CTTAA
|
|---|
| Protein sequence | MPGRSHEVDS TDQLQPIHKW FYHQGWTPLP FQRKTWEAYL EGKSGLIQVP TGSGKTYAAV
MGPIARMLTD TADRKGIRLL YLTPLRALSR DLALAIRDPI EVMNWPLRVG IRNGDSKSSE
RTKQLKSPPE ILVTTPESLT LLLSNPKAEE LFNNLDTVIL DEWHELMGSK RGSQTELCLS
WLRQQRPGLQ TWAISATIGN LNQAALHALG TKGKPIMVGG APARTTYIHS IFPEKIDGFP
WAGHLGLRMY EELVAVLNPN ISTLLFTNTR NQSERWHQCL RFACPEMEGA LALHHSAIDR
GERESIESAV KAGDIRWVVC TSSLDLGVDF QPVEQVVQIG SPKNLARLLQ RAGRSSHIPG
GTSKVLFMPT NALELLELSA VRRGLEEGLV EQRKPPNAPL DVLLQHLTSL ACGPGFNAEQ
TLKAVKTSAC YEHLSQEDWD WCLIFLKEGG ECLGAYPRYK KLEWNKESKK YHIREKMIAR
LHRFNIGTIT AAPSITVRFI RGAVLGHVEE TFISQLKPKD VFFFSGRQLE FIRLREMTAY
VKVSTKKSRT VPAWAGGQMA LSDLLTHHLR QEIDRARRED LDTPELKALK PLFDRQQDLS
VLPKTNQLLI ETCQTREGSH LFAYPFEGRF VHEGIGFLWA SRLTKLNRGT ITVSVNDYGF
ELLAPRSYPM AEIVEEYSEL LLNKENLEND LQNALNLSEL QRRRFRAIAQ IAGLMNRGFP
GSTKSTGQLQ ISASLLFDVF NRHEPSNRLL QQAYQEVMHD QLELSRLEHA LTRAAEQEWL
HVQTPRPGPL AFPLLVERLN SRMSNETVLE RIMRMQKDAL HKES
|
|---|
| |