| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Syncc9902_0558 |
|---|
| Symbol | lpxB |
|---|
| ID | 3742885 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Synechococcus sp. CC9902 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007513 |
|---|
| Strand | + |
|---|
| Start bp | 565279 |
|---|
| End bp | 566460 |
|---|
| Gene Length | 1182 bp |
|---|
| Protein Length | 393 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 637770729 |
|---|
| Product | lipid-A-disaccharide synthase |
|---|
| Protein accession | YP_376570 |
|---|
| Protein GI | 78184135 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0763] Lipid A disaccharide synthetase |
|---|
| TIGRFAM ID | [TIGR00215] lipid-A-disaccharide synthase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.142722 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGTGCGTC TGCTCATCAG CACCGGCGAA GTCTCCGGAG ATTTGCAGGG CAGCCTGTTG
ATCCATGCTC TTAAAGCTGA AGCCTCAAGA CGGGGGATCG AATTAGAGAT CTTGGCCCTC
GGTGGTCCAC GGATGAAGGC GGCTGGTGCC GAGTTGATTG CCGACACCGC TCCGATGGGT
GCGATCGGTC TCTGGGAAGC CGTTCCGTTG ATCGTGCCCA CCTTGCGGCT CCAGGCCAAG
GTGGATCGCT TGTTGGCACA ACGACCTCCC GATGCGGTGG TGTTGATCGA CTACGTGGGG
GCGAACGCTC GGCTGGGCAC TCGGTTACGC AAACTCCGTC CGTCGTTGCC GATCACCTAT
TACATCGCTC CCCAGGAATG GGCTTGGCGC TTCGGTGATG GCAGTACGAC CCAATTGCTC
GATTTTACGG ATCAGATTCT GGCCATTTTT CCTGCTGAAG CCGAGTTTTA TGCCGAGCGT
GGAGCAAAGG TCGCTTGGGT TGGCCATCCA CTGCTGGATA GCTTTCAAGA TTTGCCGGAA
CGGCAGGAAT CTCGTCGGGC GCTTGGACTT GATCCCGATG CCCCGGTCTT GCTTTTGGTT
CCAGCATCAC GGCCGCAGGA ACTGCGCTAT TTGATGCCGG CTCTGGCTCG TGCAGCGGCG
ATGCTTCAGC AGCGTTGCCC CGGCCTGCAA GTGTTGGTGC CTGCAGGGCT AGAGCGGTTT
GAACAGCCCT TGGCCGAAGC CCTTGCGGCA GCGGGTGTCC GGAACGGTCG TGTGATCCCC
GCGGCCGCTG CCGATGGTAT GAAAAAGCAG CTAGCAGCGT CGGCGGATGT GGCGCTTGGA
AAGTCCGGCA CGGTGAATTT GGAGTTGGCA TTGCAGGGGG TTCCGCAAGT GGTGGGCTAC
CGGGTGAGCC GAGCTACAGC CTTCGTTGCA AGGCATGTGC TGCGCTTCAA GGTGGACCAT
ATTTCGCCGG TGAATCTCTT GCTCAAGGAG CGCCTGGTTC CAGAATTGCT GCAGGATGAG
TTCACGCCTG AGGCTCTGGT GGAGTTGGCT CAACCCTTGC TGTATGTGGG CAGTCCAGAA
CGGAACGCGA TGCTCCACGG TTATGGCCGG CTTCGCGCCA CCCTTGGGGA GCCTGGCGTC
ACCACAAGAG CGTCTCAGGC GATCTTTGAT CAATTGATGT GA
|
|---|
| Protein sequence | MVRLLISTGE VSGDLQGSLL IHALKAEASR RGIELEILAL GGPRMKAAGA ELIADTAPMG
AIGLWEAVPL IVPTLRLQAK VDRLLAQRPP DAVVLIDYVG ANARLGTRLR KLRPSLPITY
YIAPQEWAWR FGDGSTTQLL DFTDQILAIF PAEAEFYAER GAKVAWVGHP LLDSFQDLPE
RQESRRALGL DPDAPVLLLV PASRPQELRY LMPALARAAA MLQQRCPGLQ VLVPAGLERF
EQPLAEALAA AGVRNGRVIP AAAADGMKKQ LAASADVALG KSGTVNLELA LQGVPQVVGY
RVSRATAFVA RHVLRFKVDH ISPVNLLLKE RLVPELLQDE FTPEALVELA QPLLYVGSPE
RNAMLHGYGR LRATLGEPGV TTRASQAIFD QLM
|
|---|
| |