Gene Syncc9902_0010 details

Gene Information

• Locus tag: Syncc9902_0010
• Symbol: nusB
• ID: 3743132
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Synechococcus sp. CC9902
• Kingdom: Bacteria
• Replicon accession: NC_007513
• Strand: +
• Start bp: 11833
• End bp: 12468
• Gene Length: 636 bp
• Protein Length: 211 aa
• Translation table: 11
• GC content: 54%
• IMG OID: 637770175
• Product: transcription antitermination protein NusB
• Protein accession: YP_376028
• Protein GI: 78183594
• COG category: [K] Transcription
• COG ID: [COG0781] Transcription termination factor
• TIGRFAM ID: [TIGR01951] transcription antitermination factor NusB

Plasmid Coverage information

• Num covering plasmid clones: 18
• Plasmid unclonability p-value: 0.728804
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGCCTCAC GATCCCTTTC CCGCGAGTTG GCCTTGCTGG TGCTTGGCCA AGTGTCGGAA 
CAGAACAAGT TGTCGACAGC TGATTTAGGG ATCGAGTCCC TGCTTGAAAA AGCCCTCGAA 
AGCCTCACCC AACATTGGAG GGAAGCGCTC GATTCATCCG CGTCGGAACT GGACCATGCG 
CAGCAACGTC TCCTCGATAG TGAGCTTCAA CAGGGTCAGG CCTCCACGTT GGATGTTGTG 
CGTGATCATC TGCGCTCATC GTTAGGCACT GCTGAACAGG TTTTAAATGG CCTTTCAGCC 
ACGCTTGAAC TTCCCAGGCT GCTACTCCTT TCAGATCAAG AGAAAGTTCG TTCTGCTGCG 
ATGGAACGCA TTGCTCAGGT GATCCGACAA CGCGAGAGCA TCGACGCGAG ATTGGATCAA 
GTGATGGAAG GTTGGCGGCT GGGTCGACTA CCGCGCATCG ATCGCGACAT TCTTCGTCTG 
GCTGTTGTCG ACCTTCAAAC CATGGGAACA CCTGCTCCTG TGGCGTTCAA TGAAGCCGTT 
GAATTGGCGA ATCGATACAG CGATGAACAG GGTCGTCGGA TGATTAATGG TGTGTTGCGT 
CGCTTCCACG ATGCTCAATC CACTGCAGCG GACTGA 

 

Protein sequence

MASRSLSREL ALLVLGQVSE QNKLSTADLG IESLLEKALE SLTQHWREAL DSSASELDHA 
QQRLLDSELQ QGQASTLDVV RDHLRSSLGT AEQVLNGLSA TLELPRLLLL SDQEKVRSAA 
MERIAQVIRQ RESIDARLDQ VMEGWRLGRL PRIDRDILRL AVVDLQTMGT PAPVAFNEAV 
ELANRYSDEQ GRRMINGVLR RFHDAQSTAA D