| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bcep18194_A6027 |
|---|
| Symbol | |
|---|
| ID | 3751259 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia sp. 383 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007510 |
|---|
| Strand | - |
|---|
| Start bp | 3162578 |
|---|
| End bp | 3164293 |
|---|
| Gene Length | 1716 bp |
|---|
| Protein Length | 571 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 73% |
|---|
| IMG OID | 637764347 |
|---|
| Product | TPR repeat-containing protein |
|---|
| Protein accession | YP_370265 |
|---|
| Protein GI | 78067496 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG5010] Flp pilus assembly protein TadD, contains TPR repeats |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.0697264 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGCGTAT TGCGGTGCGC GCGACGCGTG CCGCGCCCAC CGCTAGCCGA TTCCGACTGC
ATGGACGATC CGACCGATAT CCTCATTCCG CTGCTTCCGC CGTTCCTCGC GCTGCTCGGG
CAGGCCGCCG ATGCGCAGGC GCGCGGCGAG CACGCCGCGC ACGATCTGTG GCTCGCCGCC
GCCGCGCACC TGCATGCGGT CGACGCCGAT GCGCTCGCGC AACTCACCGG CACGCTCGTT
TCGCGGCAGC GTGCGGCCGA TGCGATCGCG CTCGCCGAAT GCACGGCGCG CGTGCAGCCG
GGCGCGACCG CGTACTTCAA TCACGGTTAC GCGCTGCAGA TGGCGGGCCG GCACGCGGAC
GCCGTGGCGC CGTATCGCGC GGCGCTGGCG CTCGATGCCG ACCGGCCGTC GCTGCGCAAC
AACCTCGCGA TTGCGCTGCG GCTGTCGGGC AGCGACCGCG CGGAGGAGAT CGCGCTGCTC
GAAGCGGCGG TGCGCGTCGA TCCACGCGAC GTGCAGGCGT GGATCAACCT CGTCGTCGCG
CGGATCGCGA CGCACGACCT GGACGCCGCG CTCGCGTGCG CCGCTCGGCT CATCGAGCTC
GCGCCCGACA ACGCGCTCGC GATGAACAAC GTCGCGCTGG CGATGAAGGA GGCGCAGCGC
TGGGGCGACG CCGAGCACTA CGCGGTGCGC GCATGCGAGC TGGCGCCTGG CGACGCGTCG
TTCCGTTTCA ACCTGGCGAT CATCCAGCTC GTGCGCGGCA ACTCCGCCGC CGGCTGGCGC
GGCCACGAGG CGCGCTGGGA CGGCGCGGGC GAGTTGCGCG GCCGCCGGCC GGTGCTGCCA
GGCCCGCGCT GGCAGGGCGA GCCGCTCGCC GGCAAGACGC TGCTCGTGTG GGGCGAGCAG
GGGCTCGGCG ACGTGCTGCA GTTCTGCCGC TTCGTCGCAC CGCTCGCCGA GCGCGTGCAT
CGCGAGGGCG GCCGGCTCAT CTGGAATACG TTCCCGCTGG TGGGCACGCT GATGCAGCGC
AGCCTCGGCG CGCATGCGGA TGCGTTCAGC GCGGGCGGCG GCGTCGACCA GCTGCCGGCC
TTCGATTACG AAGTACCGCT GATCGGCCTG CCGCTGATGC TCGGCATGGA GGCGTCGACG
CTCGCGTCGT CAGTGCCGTA CCTGCGGGCC GATCCGTCCG CGCGCGACGC GTGGCGCGCG
CGGCTCGCGG GCGACCGCCG GCTGAAGGTC GGGCTCGTGT GGACCGGCAG CGCGGGGCAC
CAGCGCAATC CGTTCCGGCG TGTCGGGCTC GAGCGCTATG CCGACGCATT CCGCGGGATC
GACGGCGTCG CGTTTTATTC GCTGCAGCCG GGCGCGGACG CGGATGTCGC GGCGGCGCGC
GCGGCGGGCT TCGCGATCGA GGATGTCACG GCGGAGCTGA CGAGCTTCGA CGACACGGCC
GCGTTCATCG GCGCGCTGGA TCTGGTGATC ACCGTCTGCA CGTCGGTCGC GCACCTGGCG
GGCGCGCTGG GCGCGCGCAC CTGGGTGCTG CTCGACGTGA ATCCGCACTG GCCGTGGCTG
CTCGAACGCA ACGACAGCCC GTGGTATCCG ACCGCGACGC TGTACCGGCA ACCGGTGTTC
GGCGCGTGGG CGCCGGTGAT GGAGGACGTG AGCCGCGACC TGCGGCGCCT GGCCGCGCAG
CCGGCTCAAT CGACGGAGTC GGCCCGGCAG GCCTGA
|
|---|
| Protein sequence | MRVLRCARRV PRPPLADSDC MDDPTDILIP LLPPFLALLG QAADAQARGE HAAHDLWLAA
AAHLHAVDAD ALAQLTGTLV SRQRAADAIA LAECTARVQP GATAYFNHGY ALQMAGRHAD
AVAPYRAALA LDADRPSLRN NLAIALRLSG SDRAEEIALL EAAVRVDPRD VQAWINLVVA
RIATHDLDAA LACAARLIEL APDNALAMNN VALAMKEAQR WGDAEHYAVR ACELAPGDAS
FRFNLAIIQL VRGNSAAGWR GHEARWDGAG ELRGRRPVLP GPRWQGEPLA GKTLLVWGEQ
GLGDVLQFCR FVAPLAERVH REGGRLIWNT FPLVGTLMQR SLGAHADAFS AGGGVDQLPA
FDYEVPLIGL PLMLGMEAST LASSVPYLRA DPSARDAWRA RLAGDRRLKV GLVWTGSAGH
QRNPFRRVGL ERYADAFRGI DGVAFYSLQP GADADVAAAR AAGFAIEDVT AELTSFDDTA
AFIGALDLVI TVCTSVAHLA GALGARTWVL LDVNPHWPWL LERNDSPWYP TATLYRQPVF
GAWAPVMEDV SRDLRRLAAQ PAQSTESARQ A
|
|---|
| |