Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pcar_3074 |
Symbol | dapF |
ID | 3725781 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pelobacter carbinolicus DSM 2380 |
Kingdom | Bacteria |
Replicon accession | NC_007498 |
Strand | - |
Start bp | 3587753 |
End bp | 3588592 |
Gene Length | 840 bp |
Protein Length | 279 aa |
Translation table | 11 |
GC content | 55% |
IMG OID | 637752685 |
Product | diaminopimelate epimerase |
Protein accession | YP_358479 |
Protein GI | 77920664 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0253] Diaminopimelate epimerase |
TIGRFAM ID | [TIGR00652] diaminopimelate epimerase |
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Plasmid Coverage information |
Num covering plasmid clones | 21 |
Plasmid unclonability p-value | 0.0000185766 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAATTTG CAAAAATGCA CGGAGCCGGC AATGACTACG TTTACGTCAA CTGCTTCGAG CAAACCATCG ATGACCCCGC AGAAATGGCT CGCAAGGTCA GCAATCGCAA CTTCGGTATC GGTTCGGATG GTCTGATTCT GATTCTTCCC TCCGAAGTCG CCGATGTGCG CATGCGCATG TTCAACTCTG ATGGCAGCGA ATCGGAGATG TGCGGCAACG GTATCCGTTG CGTTGCCAAA TACGCTTATG ACCACGGCCT GGTGGAAAAG AAAGAAATCA CCGCGGAGAC CGGCGCAGGT ATTCTTACCC TGCAGCTGTT TACCAACGAC CGCGATAAGG TCGAGCGGGT GCGGGTCAAT ATGGGCAAGC CGCGGTTGAC GCGTGGTGAA ATTCCCATGA CCGGCAGTCC CGAAGAGCAG GTCATCAATG CGGAGCTGAA AGTTCTCGAC CGCACCTTTC ATATCACCTG CGTTTCCATG GGCAATCCCC ATTGCATCAT TTTTGTGGAT AATGTGGATG AATTCCCGGT CGCCAAATAC GGCCCGATCA TCGAAAACGA TCCCATGTTT CCCAATCGCA CCAACGTCGA GTTCATCGAA ATCGTCTCGA CCACGGAAAT CAAGCAACGC ACCTGGGAAC GCGGCGCCGG CGAGACCTTG GCCTGCGGTA CCGGTTCCTC GGCGGTCACC GTCGCTTGCG TTCTGAACGA GCGTACCGAG CGCCGTTTGC TCAATCATCT GCTGGGCGGC GATCTGGAGA TGGAATGGGC CGAAGATGGC AGCGTCTATA TGACCGGCCC GGCGGTGCAG GTTTTCGAGG GGGTTTTCGA TCCCCAATGA
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Protein sequence | MKFAKMHGAG NDYVYVNCFE QTIDDPAEMA RKVSNRNFGI GSDGLILILP SEVADVRMRM FNSDGSESEM CGNGIRCVAK YAYDHGLVEK KEITAETGAG ILTLQLFTND RDKVERVRVN MGKPRLTRGE IPMTGSPEEQ VINAELKVLD RTFHITCVSM GNPHCIIFVD NVDEFPVAKY GPIIENDPMF PNRTNVEFIE IVSTTEIKQR TWERGAGETL ACGTGSSAVT VACVLNERTE RRLLNHLLGG DLEMEWAEDG SVYMTGPAVQ VFEGVFDPQ
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