| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pcar_2468 |
|---|
| Symbol | |
|---|
| ID | 3725170 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pelobacter carbinolicus DSM 2380 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007498 |
|---|
| Strand | - |
|---|
| Start bp | 2907297 |
|---|
| End bp | 2908469 |
|---|
| Gene Length | 1173 bp |
|---|
| Protein Length | 390 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 637752079 |
|---|
| Product | putative transport protein |
|---|
| Protein accession | YP_357877 |
|---|
| Protein GI | 77920062 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2814] Arabinose efflux permease |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 53 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGTTTGTT TTTCGTCACA ATTGTACAGC CGGGCCTTCT GGGCCATGTC GCTGGCCAAC
TTTTCCACTG CGGCCAGTTT CGGCGTGTTT TTTTTGTTTC CTCTTTTTAT CGAAGCGCGT
GGCGGATCCG AAGCCGATAT CGGTATCATT ATGGGGGTAT TCGGGCTGGC GGCGACCCTC
TGTCGTCCCT GGGTTTCCGG ATTGGTCGAT CGCATCGGCC GGCGACGCAG CTTTACCGTC
GGTTCCCTGA TGATGGTCGG TCTGCCCGTC GGATATATGT TGTTGTCCGG CCCGTTGGCC
GGATTCTATC CGGGGTTGAT GTTGTTGCGG ATTCTGCATG GGGTGGGCAT GGCCTTGTGC
TTTACCGCGG CGTTCACTTT TGTTGCCGAT ATCGTGCCGC CGGAACGTCT CAACGAAGGG
ATCGGGATCT TTGGCATATC CGGACTGGTC GGCATGGCGG TCGGTCCGGC CCTGGCCGAG
TTCGCGCTTC ACCGTTACGG TTTTTTCGCC ATGTTTGTGG TCGCTTCGCT GCTTGCCGGC
GTCGGGCTGG TGGCCCACCT GCCACTGTCC GAGCCTGTGA TCGAACGGCA AGCCCGTGAC
GTGGACACCT CGTTCTTAGA CGTTCTCAAA CGCCCTAAAA TCACGACCGT GGCCTTGCTG
GCCATACTGT TCGGTCTGGG ACAGGCGAGC ACCGGAAACT TTGTGGCACC GTTGGCCGCA
GCACGCCAGG TGGTACATGT CTCGCTGTTT TTTGTCGCGT ATTCGGTGGC GGCCGCACTG
GTGCGGATCG GTGGGGGGCG TTTGGCTGAT CGGGTGGGGG AGTTGCGGGT TATCCCCTAC
GCCCTGGTCA TTACCGGAGG GGGATTGCTG GCTCTCAGCG TGGCTTACCA GGCCTGGTCC
CTGACTCTGG CCGGCGCCGT GACCGGTTGC GGGCATGGGT TGTTGTTCCC CTCCCTGAAT
TCCCTGGCGG TACGCGATGA ACCGGGCGGT ATACGCGGCA AAATTACCGG GATTTACACC
GGCGCTTTGG ATGGCGGCAA CTTTTGCGGC TCCATTTTGC TCGGTTATAT CGGTGAATGG
CTGGGGCTGC AGATATTGTT CATGGTTGCC GGACTGGCGC TTTTCAGCGG TTTGGTCGTG
CTGCCCTGGG GACTACGTCG TCAAGCGCCA TGA
|
|---|
| Protein sequence | MVCFSSQLYS RAFWAMSLAN FSTAASFGVF FLFPLFIEAR GGSEADIGII MGVFGLAATL
CRPWVSGLVD RIGRRRSFTV GSLMMVGLPV GYMLLSGPLA GFYPGLMLLR ILHGVGMALC
FTAAFTFVAD IVPPERLNEG IGIFGISGLV GMAVGPALAE FALHRYGFFA MFVVASLLAG
VGLVAHLPLS EPVIERQARD VDTSFLDVLK RPKITTVALL AILFGLGQAS TGNFVAPLAA
ARQVVHVSLF FVAYSVAAAL VRIGGGRLAD RVGELRVIPY ALVITGGGLL ALSVAYQAWS
LTLAGAVTGC GHGLLFPSLN SLAVRDEPGG IRGKITGIYT GALDGGNFCG SILLGYIGEW
LGLQILFMVA GLALFSGLVV LPWGLRRQAP
|
|---|
| |