Gene Pcar_2148 details

Gene Information

• Locus tag: Pcar_2148
• Symbol: pilT
• ID: 3724840
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pelobacter carbinolicus DSM 2380
• Kingdom: Bacteria
• Replicon accession: NC_007498
• Strand: -
• Start bp: 2500710
• End bp: 2501834
• Gene Length: 1125 bp
• Protein Length: 374 aa
• Translation table: 11
• GC content: 54%
• IMG OID: 637751749
• Product: Tfp pilus assembly protein, pilus retraction ATPase PilT
• Protein accession: YP_357557
• Protein GI: 77919742
• COG category: [N] Cell motility; [U] Intracellular trafficking, secretion, and vesicular transport
• COG ID: [COG2805] Tfp pilus assembly protein, pilus retraction ATPase PilT
• TIGRFAM ID: [TIGR01420] pilus retraction protein PilT

Plasmid Coverage information

• Num covering plasmid clones: 65
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCAGGAAC CGGAACAGCA GGTTAAACTC GGAATTCGTG AGCTTCTGTT TAAAATGGTT 
GAGATGGGGG CCTCCGACCT TCATATCACT ACCGGAGCTC CTCCTCAGGT CAGAGTCGAT 
GGTCAGGTTA CCGGGCTGAA GCATCCTCCT TTGCAGCCGG CCGAAACCAA GCAACTCTGT 
TACAGCATTT TGACCGATGC GCAAAAACGC AAGTTCGAAG AGGAGAACGA ACTCGATCTT 
TCCTTTGGCG TCAAGGGCCT GGCGCGTTTT CGCGGCAATA TCTTTCTACA GCGCGGGGCC 
TTGGCCGGTG CCTTCCGGAT GATTCCGTAC AAGTTTCGCA GTTTTGAGGA ACTTGGACTG 
CCGCCGGTCG TCAAGGATAT TTCGCGCAAA CCTCGTGGCT TGATCCTGGT CACCGGCCCG 
ACCGGCAGCG GCAAGTCCAC CACCCTGGCA TCCATTATCG ACGCCATCAA CATGGAACGT 
CACGACCACA TCATTACCAT CGAAGATCCG ATCGAATATA TTCACCCACA TAAGAACTGC 
CTGGTAAACC AGCGCGAGGT CGGGTCCGAT ACGCACTCCT TTAAAAAGGC CCTGAAATAT 
ATTCTGCGCC AGGATCCGGA TGTGGTGTTG CTCGGCGAGT TGCGCGATCT CGAGACCATC 
GAGGCAGCTT TGACCATTGC CGAAACCGGG CATCTTTGTT TTGCCACGCT GCATACCAAT 
TCCTGTGTAC AGACCATCAA CCGTATCGTT GACGTTTTTC CCACCAATCA ACAGGCCCAG 
GTCCGCACCC AGCTGTCCTT TGTGCTCGAA GGGGTTTTGT CGCAGAACCT GTTGCCCCGA 
TCCGGAGGCC AGGGGCGTGT GCTGTGCCTT GAGGTCATGA TACCTAATGC GGCCATCCGG 
GCGCTGATTC GCGACGACAA GATCCACCAG ATCTATTCCC AGATGCAGAT GGGTCAGGAA 
CGTTACGGTA TGCAGACCAT GAATCAATCG TTGTTCATGC TCGCCTATCG TAAAATGATT 
TCGGTGGATA CCGCTTTGAC GCGCTCCCCG GAGCCGGATG AACTCAAGCA GATGCTGGCC 
AATCCCAATG CCATTTTGAA GCGGCAGCTT CATGTCGGTC AGTAG 

 

Protein sequence

MQEPEQQVKL GIRELLFKMV EMGASDLHIT TGAPPQVRVD GQVTGLKHPP LQPAETKQLC 
YSILTDAQKR KFEEENELDL SFGVKGLARF RGNIFLQRGA LAGAFRMIPY KFRSFEELGL 
PPVVKDISRK PRGLILVTGP TGSGKSTTLA SIIDAINMER HDHIITIEDP IEYIHPHKNC 
LVNQREVGSD THSFKKALKY ILRQDPDVVL LGELRDLETI EAALTIAETG HLCFATLHTN 
SCVQTINRIV DVFPTNQQAQ VRTQLSFVLE GVLSQNLLPR SGGQGRVLCL EVMIPNAAIR 
ALIRDDKIHQ IYSQMQMGQE RYGMQTMNQS LFMLAYRKMI SVDTALTRSP EPDELKQMLA 
NPNAILKRQL HVGQ