| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pcar_2042 |
|---|
| Symbol | |
|---|
| ID | 3724733 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pelobacter carbinolicus DSM 2380 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007498 |
|---|
| Strand | - |
|---|
| Start bp | 2374695 |
|---|
| End bp | 2376548 |
|---|
| Gene Length | 1854 bp |
|---|
| Protein Length | 617 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 637751644 |
|---|
| Product | membrane-bound lytic murein transglycosylase D precursor |
|---|
| Protein accession | YP_357453 |
|---|
| Protein GI | 77919638 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0741] Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.00000000130746 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCTGAAAA GATATGGGCT TGTGATTTTA GTTGCAGGAC TGTTGGCCGG TTGTCAAACG
TCCATGCAGT CGGTTGCCGT TGGCGGTGGG GATGAGCCGG CCGATTCCGT GCGCATGGAG
GCGGTAGCCG ACTCAGGTAT GGAGCAGCCG CCTACCAGGG GTCTCGGGGC AGCGGATGAC
GTGAAGGATA ATGATGTTCC GGCGGTCGAA TCCGGTCTGG AGACCGAGGA TGCCTTGAAT
GTTTGTGAGG TGCCCGTGGA TCCGGAAACT TTGGAAGACA TGGAACTTCT TTCCGATGTC
GATAAAAAAC CGCCGGAGGA CGAGGGCGAC ACGGCCGTCG AAAGAGATCC GGTGTACGAT
CTGCCGGTTG TGGAAAACGA CAAGGTTCGT TATTTCATCG ACTATTACAC CAAGCGCGGC
AGTCGCGGCT TTCGGCGCTG GTTGGAACGT TCAGGGCGTT ATCTGCCGAT GATGCAGGCA
GTGTTTGCCG AGGAGGGGCT GCCCCTGGAC CTGGCTTATC TTGCCATGAT CGAATCCGGT
TTTAACGTCA AAGCCTGCAG TCGCGCCAAC GCCGTCGGTC CATGGCAATT TATTGCCAGT
ACCGGCAAAA TGTACGATTT GCATAACGAA TGGTGGCGTG ACGAACGCCG CGATCCGGTC
AAAGCCACCA GGGCCGCCGC GCGCCATCTG CGAGATCTGC ATGCGCGTTT TAACGGGGAC
TGGCCTTTGG CCATTGCCGC CTACAATGCC GGACCCGGCA AGGTTAGTCA GGCTATTCGC
AGGACAGGCA GTCGTGATTT TTGGAAAATC AGCAGGGGAA AGCACCTGCG CGCCGAAACC
CGCAACTATC TGCCGAAATT ATTCGCGGTG TTGCACATCG CCAAGAGTCC GGCCAAATAC
GGGTTCGAAA ATCTCCGCTA TCAGGCGCCG CTGGTTTACG ATGAGGTCGC TTTACCCAGC
AGCACCGATC TGGATATCGT TGCCCGTTTA TGCGACGTGA AGTATGAGGA TATTCAAAAC
CTCAACCCCG AACTGAAACG CTGGTGCACG CCTCCCGGCA TAAAGAACTA CCGACTGCGG
ATTCCTGCGG GCAAACGCGA GGCTTTTATG AAGGCGTATG CCAAAATTCC GGCTAACCGT
CGAGCCAATT ACCGCCATTA TCGGGTGCGT TCCGGTGACA CCCTTGGTGC GCTGGCCGTC
CGGTATGGCA TCCGGTCGCG GGATATCATG CTGCTGAACC GCATCAAAAA TCCCCGCGCC
TTGCGCATCG GTAGCGATTT GATTCTGCCG TTGCGGCGCG ATTATTCAAA AGCGCCGGTA
GCGGCCTTGG GGGACGATTA TGTTCGCTCC AAAACCCGCA GCTATAAAGT TCGCAACGGG
GATAGCCTGT GGCGGATTGC ACGTCGCTTT AACGTCAGCA CCGCGCAACT GGCGGCCTGG
AACGGCATGG CGGTTAACGG CGTGTTGCGC CCGGGCAAGG TTTTAAAGGT TGCCGGAGGG
GCGTCCCGCA AGCTTGTGCT TACAGGGACA TACCGCGTTC GGTCGGGCGA TAATTTGTGG
ACCATTGCCA GAAAGCGTAA TGTGACGGTC AGCCAGTTGT GTGCCTGGAA CGGACTTAGC
AAAAATAGTT TGCTGAAACC CGGCATGGTG CTGAAGCTTG CGGCTGCCGG CGGGTCTGTA
AAATCACGCA AAATCATTTA TAAAGTGCGC TCCGGTGACA GTTTGTGGAG CATCAGTCGT
CGCTTTGATC TCGCGATTGG GAAGATTTGC AGCTTGAACA ACCTGGGTCG AAAGCATGTG
CTGCAGCCCG GGCAGAAACT GACCTTGCTG GTTGGTGACG ACCACCGGGG ATAA
|
|---|
| Protein sequence | MLKRYGLVIL VAGLLAGCQT SMQSVAVGGG DEPADSVRME AVADSGMEQP PTRGLGAADD
VKDNDVPAVE SGLETEDALN VCEVPVDPET LEDMELLSDV DKKPPEDEGD TAVERDPVYD
LPVVENDKVR YFIDYYTKRG SRGFRRWLER SGRYLPMMQA VFAEEGLPLD LAYLAMIESG
FNVKACSRAN AVGPWQFIAS TGKMYDLHNE WWRDERRDPV KATRAAARHL RDLHARFNGD
WPLAIAAYNA GPGKVSQAIR RTGSRDFWKI SRGKHLRAET RNYLPKLFAV LHIAKSPAKY
GFENLRYQAP LVYDEVALPS STDLDIVARL CDVKYEDIQN LNPELKRWCT PPGIKNYRLR
IPAGKREAFM KAYAKIPANR RANYRHYRVR SGDTLGALAV RYGIRSRDIM LLNRIKNPRA
LRIGSDLILP LRRDYSKAPV AALGDDYVRS KTRSYKVRNG DSLWRIARRF NVSTAQLAAW
NGMAVNGVLR PGKVLKVAGG ASRKLVLTGT YRVRSGDNLW TIARKRNVTV SQLCAWNGLS
KNSLLKPGMV LKLAAAGGSV KSRKIIYKVR SGDSLWSISR RFDLAIGKIC SLNNLGRKHV
LQPGQKLTLL VGDDHRG
|
|---|
| |