Gene Pcar_1116 details

Gene Information

• Locus tag: Pcar_1116
• ID: 3722828
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pelobacter carbinolicus DSM 2380
• Kingdom: Bacteria
• Replicon accession: NC_007498
• Strand: -
• Start bp: 1311247
• End bp: 1313211
• Gene Length: 1965 bp
• Protein Length: 654 aa
• Translation table: 11
• GC content: 58%
• IMG OID: 637750706
• Product: alpha amylase domain-containing protein
• Protein accession: YP_356535
• Protein GI: 77918720

Plasmid Coverage information

• Num covering plasmid clones: 59
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAACAGGC TTTGCCTTTT CTCCATATAT CACCTTAACC TGATGTTTTC TTCCATTGCG 
GAAGAACAGC GCCCAGAGGT CGTACGGCGG TGCTACTGGC CCCTGCTGCG CCTGATTCGC 
CGGTACGAGC TGCCCCTCGG CATCGAGGCT TCGGGCTACA CCCTCGAAGC GATCCATGCC 
ATCGATCCGG CATGGGTCGC CGAACTGCGC GATCTTTGCG AAAACGGGCC CGCGGAATTT 
ATCGGCAGCG GTTATGCCCA GATCATCGGC CCCCTGGTAC CGGCCGACGT CAATCGGGAC 
AATCAGCGGT TGGGGCTGCA AACCTATAAA AAAATCCTGG GCTTCCAGCC GCAATTGGCG 
CTGGTCAACG AACAGGCCTA CGCCGCCGGT CTGATCCCGA TTTACCGTCA GGCAGGGTAT 
CGCGCCATCG TTATGGAGTG GGACAACCCC GGCAGCAACC ACCCCGACTG GGACCCTGAT 
TGGCGCTACC TCCCCCAGCA CGCCCTCGGG CCGGACGGCA CCGCCTTGCC GGTGATCTGG 
AATAAATCGA TCCCGTTTCA GAAATTTCAG CGCTACACCC ACGGAGAAAT CGAGTTGCCG 
GAATATCTCG ATTTCCTGTC GTCCCATCGC AATGACGACC CGCGGACCTT TGCCCTTTAC 
GGCAACGATG CCGAAATTTT CGATTTTCGC CCCGGGCGCT TTGACACCGA GGCCGAAATC 
GGAGAAAAAA GCGAATGGCT GCGCATAGCC CAACTATACA AAGCGCTGCT CTCCGATAAC 
CGGTTTTCCC TGATCGGACC GCACAAGGTC CTGGATTTTC TGGAATGCCC CGGCGCAGGC 
AACCGACTGC GGCTTGAAAC AGCGGCGCAA CCGGTTCCGG TAAAAAAACA GGCCAAATAC 
AACGTCGTGC GCTGGGGGCT CACCGGTCGC GACGACATGG CCCTCAATAC CGCTTGCTGG 
CGTCTCTATC AGGCCATCGC CGACAACCCC GCCTGTACCG ATGCCGACCG GCGGGAACTC 
TGCTACCTCT GGAGCAGCGA TTTCCGTACG CACATCACTG CCGAGCGCTG GCAGAATATG 
CAATCCCGCT TGACCGCCCT GCAACAGCGC CTGGTACCGC CATGCCCGGC ACATGTCCGT 
ATTCCCTCCG GGAAAAAACC GCAACCATTC ACAACAGGGC AGGAAGGTTC CTTTTTCATC 
ATCGAAACCG CGACGCAAAA ACTCCGCCTT AACCTGCGGC GCGGCATGGC CATCGACGGT 
TGGTGGAACA AACAACTATC CTCCGCCCCC CTCATCGGAA CCCTGCCCCA CGGTTATTTC 
GATGACATCC AGTTCGGCAT GGACTATTAC ACCGGCCATT TTGTTCTGGA AGTCGCGGGC 
CGACACAAAA TCACCGATCT CGTTGCGGTA GAGCCCCGGA TAGAATACGG AAAGAAGAAC 
ATGATCCTGA CGGCAGAGAT CCCGACTCCC GTCGGGCCGG TGATCAAAAC CATCCGTGTT 
GATGCCATCG AACCCCGCAT AGAAATCGGT CATCATTTTC ACTGGCCTGC ATGCCCCCTT 
GGCACTTTGC GATTGGGGCA CGTCACCCTT AATCCGGATG CCTTTGATGG ATCCTCCCTG 
TTTTTCCGGA GCCATAACGG CGGCTACACG CCCGAGACCT TTTTGTTACA CGGCGAACCG 
ATCAACCACC TGACCCCGGT GTCGACTCTG GTGTCGGCCA ACAATGCCCT CGGTATGACC 
TCGGGTCTGG CCGAACTCGG CGACCGCCTG AAGTGGATCC GGGTCCAAAG CGACAAAACC 
TCGGCGGCCC TGACCGGTCA TATCGTCCAT GCTCCCGTGA ACCATCACTA TCTGTATCGT 
CTTGCCCTGT CCGCCATGGA AATGGACGAT ACCGCCTGTC GCGTACGGGA ACGCCATTGT 
TTTCATGATC GACGGATTTG CCTTACCATC ACCTCAGGAA ACTGA 

 

Protein sequence

MNRLCLFSIY HLNLMFSSIA EEQRPEVVRR CYWPLLRLIR RYELPLGIEA SGYTLEAIHA 
IDPAWVAELR DLCENGPAEF IGSGYAQIIG PLVPADVNRD NQRLGLQTYK KILGFQPQLA 
LVNEQAYAAG LIPIYRQAGY RAIVMEWDNP GSNHPDWDPD WRYLPQHALG PDGTALPVIW 
NKSIPFQKFQ RYTHGEIELP EYLDFLSSHR NDDPRTFALY GNDAEIFDFR PGRFDTEAEI 
GEKSEWLRIA QLYKALLSDN RFSLIGPHKV LDFLECPGAG NRLRLETAAQ PVPVKKQAKY 
NVVRWGLTGR DDMALNTACW RLYQAIADNP ACTDADRREL CYLWSSDFRT HITAERWQNM 
QSRLTALQQR LVPPCPAHVR IPSGKKPQPF TTGQEGSFFI IETATQKLRL NLRRGMAIDG 
WWNKQLSSAP LIGTLPHGYF DDIQFGMDYY TGHFVLEVAG RHKITDLVAV EPRIEYGKKN 
MILTAEIPTP VGPVIKTIRV DAIEPRIEIG HHFHWPACPL GTLRLGHVTL NPDAFDGSSL 
FFRSHNGGYT PETFLLHGEP INHLTPVSTL VSANNALGMT SGLAELGDRL KWIRVQSDKT 
SAALTGHIVH APVNHHYLYR LALSAMEMDD TACRVRERHC FHDRRICLTI TSGN