| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pcar_0417 |
|---|
| Symbol | serA-1 |
|---|
| ID | 3723071 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pelobacter carbinolicus DSM 2380 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007498 |
|---|
| Strand | - |
|---|
| Start bp | 509005 |
|---|
| End bp | 510609 |
|---|
| Gene Length | 1605 bp |
|---|
| Protein Length | 534 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 637750002 |
|---|
| Product | D-3-phosphoglycerate dehydrogenase |
|---|
| Protein accession | YP_355847 |
|---|
| Protein GI | 77918032 |
|---|
| COG category | [E] Amino acid transport and metabolism
[H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0111] Phosphoglycerate dehydrogenase and related dehydrogenases |
|---|
| TIGRFAM ID | [TIGR01327] D-3-phosphoglycerate dehydrogenase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 35 |
|---|
| Plasmid unclonability p-value | 0.458098 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAAATTC TGGTTGCGGA AAAAATTGCC AAAGAGGGGC TACTGATTCT TGAAAAAGAA
CCCCTCGCCG AGCTGGACGT CAAAACCGAC ATGAGTCGCG AAGAGTTGCT GGGCATTATC
GGCAACTACG ACGCGCTGGT GATTCGCAGC GCCACCAAGG CGGACCGCGA ACTGCTCGAT
GCCGGCGAGA ACCTTAAGGT CGTTGCCCGA GCAGGCGTGG GGCTTGACAA CGTCGACCTC
AAAGCGGCCA GCGAAAAGGG CATCATCGTC TGCAACGCTC CCTTCGGCAA TATCAACAGC
GTCATTGAAC ATGCCATGGC GCTCATCCTG GCAGCCTGCC GCAAACTGGT CAAAGCCGAC
AACAGCATCA AAAGCGGCGA GTGGAACCGT TCCATCAAAG CCATGGAACT CAAAGACAAG
GTTGTCGGCG TCGTCGGCCT CAATAAAATC GGTGGCGGCG TCGTCACCCG GCTCAAAGCT
TTCGGCTGCG AGGTCATCGG CTGCGACCCC TATATTTCCG AAAAACGTGT TCAGGACCTG
GGTATTCGTC TTGTCTCTCT CGATGAGTTG CTCGCCAGTT CGGACGTCAT CAGCCTGCAT
GTCCCGCTGA ACGATGAAAC CCGCAACCTC ATCGACGCTC CCCAGCTCGC ACAGATGAAA
GACAACGTTA TTCTGGTCAA TACCGCCCGC GGCGGGATCA TCAACGAGCA GGCCTTATTA
AACGCACTGG AGAGCGGTAA AATCGGCGCG GCCTGTGTTG ACGTCTGGAG CGAGGAACCG
CCCAAAAGCG ACCACATCAA GCAACTCATC GCCCATGAAC GTACCATCGC CATTCCTCAC
CTGGGCGCAT CGAGTGTCGA GGCGCAGATC AACGTTTCCA TTGACGTCGC CAAAGATATC
GTCCGTTTCG CCAACGAACA GCCCTTGGAA TACGCAGCCA ATATCCCGCG TTTCGACAGT
TCGATGATGG ACCAGATGCG GCCGTTTTTA CGCCTGGTGA ATATTATGGC GGACTTCGTC
TCGCAACTGG CCGATTCCAA CCTGAACAAG ATCACCTTCA CCTATCAGGG CGATGTGGCC
GACTACTGCT GCACACCGAT TAGCGTCTGC GGACTGGCCG CCCTTCTCGA TAACAAGGTG
GAGCAGGATG TCAACATGGT CAACGCTTCC CTTATTGCCG AGAACATGGG AATCACCATC
GAAGAGATTA AAAACGCCGA ACCGGCGGCT TTTGCCAATA CCGTAACCAT CGGCATCGAA
GGTCCCGGCC TGCGACGCAC CATTGTCGGG ACCCACTTCG AGGGACAGCC CCGCATTGTA
CGCCTGCGCG ACTACCAGGT CGACTTCGCC CCCGAAGAAC ACATGCTGGT CATCACATAC
CGGGATCAAC CGGGCATGAT CGGCAAAATC GGCCAGATCC TGGGCGAGCA CGACATCAAT
ATCGCAGCCA TGAACCTCGG GCGCCAGGAA AAGCTGGGCG AAGCCATGGT CATCCTGTCC
CTCGACTCAG CGGTAGCATC GCATGTGGTG GCGGAGATCG GCTCCGTGGT CGATGCCACG
TTCATCAAAT ACCTGCACCT GATCAAAGCA CGCCCCGAGC AATAA
|
|---|
| Protein sequence | MKILVAEKIA KEGLLILEKE PLAELDVKTD MSREELLGII GNYDALVIRS ATKADRELLD
AGENLKVVAR AGVGLDNVDL KAASEKGIIV CNAPFGNINS VIEHAMALIL AACRKLVKAD
NSIKSGEWNR SIKAMELKDK VVGVVGLNKI GGGVVTRLKA FGCEVIGCDP YISEKRVQDL
GIRLVSLDEL LASSDVISLH VPLNDETRNL IDAPQLAQMK DNVILVNTAR GGIINEQALL
NALESGKIGA ACVDVWSEEP PKSDHIKQLI AHERTIAIPH LGASSVEAQI NVSIDVAKDI
VRFANEQPLE YAANIPRFDS SMMDQMRPFL RLVNIMADFV SQLADSNLNK ITFTYQGDVA
DYCCTPISVC GLAALLDNKV EQDVNMVNAS LIAENMGITI EEIKNAEPAA FANTVTIGIE
GPGLRRTIVG THFEGQPRIV RLRDYQVDFA PEEHMLVITY RDQPGMIGKI GQILGEHDIN
IAAMNLGRQE KLGEAMVILS LDSAVASHVV AEIGSVVDAT FIKYLHLIKA RPEQ
|
|---|
| |