| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pcar_0393 |
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| Symbol | mshD |
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| ID | 3723182 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pelobacter carbinolicus DSM 2380 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007498 |
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| Strand | + |
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| Start bp | 482604 |
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| End bp | 483053 |
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| Gene Length | 450 bp |
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| Protein Length | 149 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 637749978 |
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| Product | MshA pilin protein MshD |
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| Protein accession | YP_355823 |
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| Protein GI | 77918008 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4967] Tfp pilus assembly protein PilV |
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| TIGRFAM ID | [TIGR02532] prepilin-type N-terminal cleavage/methylation domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 0.000144635 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGACCGGCT CCGGTAAACA TAGCGGGGGA TTTACCCTCA TCGAATTGGT GGTCTCCATG
GTGGTGGTTT CCATCGCCCT GGGCGGGGTG CTGATGGTGA TGAACTACAC TGTTCAGCAC
AGCGCCGATC CCATGTTGCA GCACCAGGCG GTGGCTATCG CCGAATCCTA TCTTGAAGAG
GTCCTGTTGC GGTCATATGC GGACCCGGAT GGGAGCGATG GTGAAACGGT GCGTAGTCTG
CTGGATGACG TGGACGATTA CGACGGCTGG GCGGATACCG GGGCCTGTGA TCAGGAAGGA
ACCGCCATTA CCGGGCTGGA ATCTTATACG GTGTCGGTGG CTGTTGATGA TGCGGTGTTG
AATACGGTGG CCTGCAAGAA AGTGACGGTG ACGGTGAGTC ATCCGACCGG TATCAACCTG
AAATTGAGCG GTTATCGCAC GAATTATTGA
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| Protein sequence | MTGSGKHSGG FTLIELVVSM VVVSIALGGV LMVMNYTVQH SADPMLQHQA VAIAESYLEE
VLLRSYADPD GSDGETVRSL LDDVDDYDGW ADTGACDQEG TAITGLESYT VSVAVDDAVL
NTVACKKVTV TVSHPTGINL KLSGYRTNY
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