| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pcar_0091 |
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| Symbol | mfd |
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| ID | 3722886 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pelobacter carbinolicus DSM 2380 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007498 |
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| Strand | - |
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| Start bp | 107317 |
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| End bp | 110802 |
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| Gene Length | 3486 bp |
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| Protein Length | 1161 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 637749670 |
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| Product | transcription-repair coupling factor |
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| Protein accession | YP_355524 |
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| Protein GI | 77917709 |
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| COG category | [K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG1197] Transcription-repair coupling factor (superfamily II helicase) |
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| TIGRFAM ID | [TIGR00580] transcription-repair coupling factor (mfd) |
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Plasmid Coverage information |
| Num covering plasmid clones | 37 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACACCTT CTGATCCCCA TACGGAACTC CATCCGGCCC TGGACGAATT AGCCGCCACC
CTGGAGGGCC TGCCTCACAC TGAACTACTG GGCATGACCG GCACCAGCTG CGCCTTCGTG
CTTGCGCGCC TGCTGGCCGA AAACCCCGCC CCTTTGCTGA TACTGGCTGC CAGCCAGGAA
CAAGCGGTTC GCATAACCGC CGATCTCGGC TTTTATCTGG GTCGCCCCGA CCAGGTATTT
TACCTGCCCC ACTGGGAAAT GCGCCCCTAC GAAGCCCTGC TGCCCCACCC CGCGATCGAA
GCCACTCGCC TGGCAACACT GGCGGCGCTG GCCGACGGGC GCGCCCTGGC GCTGGTCATG
ACCGTGCGCT CCGTCATGCA GCGGGTCATG CCGCGACGCG TGCTCGCCGG GCTGCGCAGC
TGCCTGCGGG AACAGGAGCT TCACCCCCGC GAAGCCCTGC TGCCGCACCT GGCCGAACTC
GGCTACCATG CCGTACCGCT GGTGGAAGAT CCCGGCACCT TCTCCGTGCG CGGCGATCTG
CTGGATCTGT ACCCGCCGAC CCTGCCGGAA CCGGTGCGCA TCGAATTTTT CGGCGACCAG
ATCGAACGCA TGCGCCCCTT CGATCCCACC ACCCAGCGTT CCCGCGAACA CCACATAGCC
TCGCTGGAAT TGCTGCCGGC AAGGGAAATG ATCCTGGCCG GCGAGCACCT GGAAACCTTC
GCGCGAACCC TTAAACAACG CGCCGATGCT CTCGGCATAG CGCGACCTCA ACGCGAAGCC
CTGCTCGAGG AAGCACGCGA AGGACTGCTC GGTCCGGGAC ACAGCTTCTT CATGCCCCTG
TGCTACGACG GACTCGACAC TATTTTCGAC TACGTCACCG GCGGTCGACT GGTGCGTCTC
GACCCTCCGG CCATCGCCCA GGAAATGGAT CGGCTCAGCG ATGAAATCAG CGAAGGCGAA
CATCGCATGG CGAACCATGG CGAGCTGTAT CTGCCCGGGG ATGCTCTCTA CCTGAGCGGA
AACGAGCTGG CCGACAGCCT CGCCCTTCTG CCGCACATCG ACGTCACGAC TCTGCGTCTG
TATGACCTGG AGGAACAGAC GCCGCGGGTG GCACTGCATA CCGAAAGCAA TGCCGACCTG
CGCAGCAATC AGCAACAGGA CGGTGGCCTG GCCGCGCAAC TGGCCAGCCG CCTGCACGGC
TGGCAGAAGC AGAACTGGCG CCTGCTGCTG GTCTGTCATC AGCAGGGCCA GGCCGAACGC
CTGCAGGCCC TGCTGGCGGG ACGCGGCCTC GACCTGCCGT TGCGCGACGG CATCGATATC
GCCAAACTCG AACCGGGCCG CCCCGTCATC ACCCTGGGCG AGCTGTCCAG CGGATTCCGC
CTGCCGGATG AACACCTGGC CATCATCACC GAGGAAGAGA TTTTCGGGCG TCGAGCCCGT
CGCCGCAGCG GCGCTGCCGA AGCCAGGGCC AAAGCCCGGC TTTCCTCCCT GGCCGAACTG
CGCGAAGGGG ATCTGGTGGT GCATGCCGAC CACGGCATCG GACGCTACCA GGGCCTGCAG
CACCTGCAAC TGCAAGGCAA CGAAGGCGAC TTTCTGAATC TGGAATACGC CGGCAAGGAT
CGTCTCTACC TGCCGGTGGA GCGCATCGAA AAGATCCAGA AATATGTCGG CGCCGAAGGT
GCCATGCCGC GCCTCGACCG CATGGGCGGC GGCGCCTGGG AAAAGGCCAA ACTCAAGGCC
CGTGCCGCGG TCGAAGAACT GGCCCGCGAG CTGCTGCAGA TCTATGCACG CCGCGAAATG
CACGAAGGTT TTCATTATTC GCCGCCGGAT GCCATGTTCC GCGAATTCGA GGCGGCCTTT
CCCTACGAGG AAACCGCCGA CCAAATGGCC GCTATCAACG ATGTGCTGAC GGACATGCAA
ACTCCGCGGG CCATGGACCG GGTGATCTGC GGCGACGTCG GTTACGGCAA GACCGAAGTG
GCCATCCGCG CGGCCTACAA AGCGGCTCTG GACGGCAAAC AGGTCGCCGT ACTGGTTCCG
ACCACCATCC TGGCCCGCCA ACACGGGCAG ACCTTTGCCG AGCGACTGAA GGACACACCG
GTCACCGTTG CGTCCCTGTC GCGGCTGAAC AGCTCCGCCG AACAGAAACA GATTCTGCAG
CAAGCCGCCG ACGGCAAGAT CGACATCCTT ATCGGCACCC ACCGACTGCT GCAACGCGAC
GTACGCTTCA AGGATCTGGG CCTACTGATC GTCGACGAGG AACAGCGCTT CGGAGTCACC
CACAAGGAGC GCCTGAAAAA GCTGCGCGCC GAAGTCGACC TGTTGACCCT CACCGCAACG
CCCATTCCGC GCACCCTGCA CATGAGCCTG CTGGGACTGC GCGACCTGTC GGTCATCGAC
ACGCCGCCGG TGGACCGCCA GGTTATACGC ACTTACGTCA GCCGCTTCGA CGACGATCTG
ATCCGCCAGG CCATCCTCAA TGAACTGCGC CGGGGCGGAC AGGTCTTTTT CGTGCATAAC
AGGGTACAGA ATATCGGCGC CATGGCCGAA TTCATTCAGA GTCTGGTTCC CGAAGCAACC
GTGGCCGTCG GCCATGGCCA GATGACCGAA AAAGCTCTGG AAGCGGTGAT GATGGACTTC
GTGGAAGGCA AAACCAACGT GCTGGTGTGC AGCACCATCA TCGAAAACGG CCTCGATATC
CCCCGCGCCA ACACCATTAT CGTCAATCGC GCCGACTGTT TCGGGCTGGC CCAGCTATAC
CAGCTGCGCG GTCGGGTCGG GCGCTCGCAC CTGCGTGCCT ACGCCTATCT GCTGATCCCC
GGCGAGAGCA CCCTGACCCA CGAAGCACGT GAACGGCTGA GGGTCTTGAC CGAGCTGACC
GAACTCGGTG CCGGCTTCCG CATTGCCAGC CACGACCTGG AGCTGCGCGG CGCCGGCGAC
CTGCTCGGTC CCAAGCAGTC GGGACAGATC GCGGCCATCG GTTTCGAGAT GTATGCCGAA
CTGCTGGAAG ACACCATTGC GGAACTTAAA GGCCAACAAC GGGAAGACCG TATCGACCCC
GAGATCCGTC TTGGGCTTTC GGCTTTTCTG CCGGAAAAAT ACCTGCCCGA CCCCAACCAG
CGGCTGGTGT TTTACAAACA ACTGGCTTCC GCCGAAGACG AAGAAACCCT TTACGACCTG
GCCGACGAAT TGCGTGACCG TTTCGGGGAT CCCCCCGATC CGACCCTGCT GCTGATGGAG
GTCATGAAAC TGCGGGTACT GATGAAACGA CTGCGCATCG CCACCGCCGA CTACGATGGC
CACAGCCTGA CCTTCGGGTT CGCCCAGGAC ACGCCGGTGC AGCCGGACAA AATCATCGCA
TTGCTCGACA TGGATCCTAA AAAGTACAGC TTTTCTCCTG ACTTCCGCCT CGGCATACGT
CTCGGCAGAC AGCCCGGCGA AGCCGCGTTG GGCGAGGCTA AAAAAGCGTT GCAAGGCCTC
ATTTAG
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| Protein sequence | MTPSDPHTEL HPALDELAAT LEGLPHTELL GMTGTSCAFV LARLLAENPA PLLILAASQE
QAVRITADLG FYLGRPDQVF YLPHWEMRPY EALLPHPAIE ATRLATLAAL ADGRALALVM
TVRSVMQRVM PRRVLAGLRS CLREQELHPR EALLPHLAEL GYHAVPLVED PGTFSVRGDL
LDLYPPTLPE PVRIEFFGDQ IERMRPFDPT TQRSREHHIA SLELLPAREM ILAGEHLETF
ARTLKQRADA LGIARPQREA LLEEAREGLL GPGHSFFMPL CYDGLDTIFD YVTGGRLVRL
DPPAIAQEMD RLSDEISEGE HRMANHGELY LPGDALYLSG NELADSLALL PHIDVTTLRL
YDLEEQTPRV ALHTESNADL RSNQQQDGGL AAQLASRLHG WQKQNWRLLL VCHQQGQAER
LQALLAGRGL DLPLRDGIDI AKLEPGRPVI TLGELSSGFR LPDEHLAIIT EEEIFGRRAR
RRSGAAEARA KARLSSLAEL REGDLVVHAD HGIGRYQGLQ HLQLQGNEGD FLNLEYAGKD
RLYLPVERIE KIQKYVGAEG AMPRLDRMGG GAWEKAKLKA RAAVEELARE LLQIYARREM
HEGFHYSPPD AMFREFEAAF PYEETADQMA AINDVLTDMQ TPRAMDRVIC GDVGYGKTEV
AIRAAYKAAL DGKQVAVLVP TTILARQHGQ TFAERLKDTP VTVASLSRLN SSAEQKQILQ
QAADGKIDIL IGTHRLLQRD VRFKDLGLLI VDEEQRFGVT HKERLKKLRA EVDLLTLTAT
PIPRTLHMSL LGLRDLSVID TPPVDRQVIR TYVSRFDDDL IRQAILNELR RGGQVFFVHN
RVQNIGAMAE FIQSLVPEAT VAVGHGQMTE KALEAVMMDF VEGKTNVLVC STIIENGLDI
PRANTIIVNR ADCFGLAQLY QLRGRVGRSH LRAYAYLLIP GESTLTHEAR ERLRVLTELT
ELGAGFRIAS HDLELRGAGD LLGPKQSGQI AAIGFEMYAE LLEDTIAELK GQQREDRIDP
EIRLGLSAFL PEKYLPDPNQ RLVFYKQLAS AEDEETLYDL ADELRDRFGD PPDPTLLLME
VMKLRVLMKR LRIATADYDG HSLTFGFAQD TPVQPDKIIA LLDMDPKKYS FSPDFRLGIR
LGRQPGEAAL GEAKKALQGL I
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