| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RSP_2567 |
|---|
| Symbol | sqdC |
|---|
| ID | 3720200 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodobacter sphaeroides 2.4.1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007493 |
|---|
| Strand | - |
|---|
| Start bp | 1211807 |
|---|
| End bp | 1212622 |
|---|
| Gene Length | 816 bp |
|---|
| Protein Length | 271 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 640070744 |
|---|
| Product | putative sulfolipid biosynthesis protein |
|---|
| Protein accession | YP_352625 |
|---|
| Protein GI | 77463121 |
|---|
| COG category | [G] Carbohydrate transport and metabolism
[M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0451] Nucleoside-diphosphate-sugar epimerases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCGGCTTG CGCTGACCGG AGCAGGCGGC CTCGTCGGCC GCTTCATCGC CGAGGCCGCG
CGGGCTGCGG GCCATTCGCT GGTGATCCTT GCGCGCAGCC CTCTGCCCGG CGCGGACGAG
CATCGGCCCT ACGATCTTCT GGGCCCGCTT CCCCCGCTGG CCGATGTGGA TGCGCTGATC
CACTGTGCCT TCCAGCATGT TCCGGGCCGC TACCGGGGCG GCGAGGGCCA AGACCCCGAG
GGCTTCCGCC GCGCCAACCT CGAGGGCAGT CTGCGGCTCT TCGAGGCGAT GCGGGGGCGG
CGGATCCTCT TCCTCTCCTC CCGCGCCGTG TTCGACGGCT ACGGCCCCGG CACGTTGCTC
ACCGAGGCCA TGCCGCCCTG CCCCGAAAGC CTCTATGGGC AGGTCAAGGC CGAGGCCGAG
GTCGCTCTCT TCGCCGAAGG AGGCGCGAGC CTGCGCGCGA CCGGCGTCTA CGGCCCCGGG
CCGGATCACA AGTGGCGCGT TCTTTTCGAG GACTTCCGTG CGGGACGTCC GATCGAGCCG
CGGGTCGCGA CCGAGGTCCA TGGCGCGGAT CTGGCCGCGG CGGCGCTCCT CCTGCTCGAG
AAGCCGGACG CGGGCGCCTT CCATGTCTCG GATCTGCTGC TCGACCGCCA CGATCTTCTC
GCCGAGGTCG CCCGGATCGA GGGGATCGCC GCGCCCCTGC CCCCACGCGC GGATGCCGCG
CGCATCAGCC CTCTCGACTG CCGGCGGCTT TCGGCGATGG GCTGGCGGCC CGGAGGGCTC
AGCCTGTTGC GCCAAACGCT GCCGCTCATG ATTTAG
|
|---|
| Protein sequence | MRLALTGAGG LVGRFIAEAA RAAGHSLVIL ARSPLPGADE HRPYDLLGPL PPLADVDALI
HCAFQHVPGR YRGGEGQDPE GFRRANLEGS LRLFEAMRGR RILFLSSRAV FDGYGPGTLL
TEAMPPCPES LYGQVKAEAE VALFAEGGAS LRATGVYGPG PDHKWRVLFE DFRAGRPIEP
RVATEVHGAD LAAAALLLLE KPDAGAFHVS DLLLDRHDLL AEVARIEGIA APLPPRADAA
RISPLDCRRL SAMGWRPGGL SLLRQTLPLM I
|
|---|
| |